Tetraodon nigroviridis (spotted green pufferfish): GSTEN00021793G001
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Entry
GSTEN00021793G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
GSTEN00021793G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00021793G001
03041 Spliceosome [BR:
tng03041
]
GSTEN00021793G001
03036 Chromosome and associated proteins [BR:
tng03036
]
GSTEN00021793G001
Enzymes [BR:
tng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSTEN00021793G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
GSTEN00021793G001
mRNA cycle factors
Common to processing body (P body) and stress granule
GSTEN00021793G001
Spliceosome [BR:
tng03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
GSTEN00021793G001
Chromosome and associated proteins [BR:
tng03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
GSTEN00021793G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAG02638
UniProt:
Q4S9P4
LinkDB
All DBs
Position
2
AA seq
602 aa
AA seq
DB search
MVTMTTGQTGALEDEDPLAMTEKAAGQDLQETPLTTALEDVPIDPSRLPSMTVDQDQEEG
MNVEVFLVGETLAGQMSPRMMTGPNQLLAMSAWSMNFSLEATTGINFEKYDDIPVEATGT
NCPSHIESFQDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAA
FLLPVLSQIYTDGPGDALQAIKSSGQENGRYGRRKQYPISLVLAPTRELALQIYDEARKF
AYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEA
DRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVG
STSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACT
SIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI
GRTGRVGNLGLATSFFNDKNSNITKDLLDLLVEAKQGIPTWLESLAYEHQHKSSNRGRSK
RFSGGFGARDYRQSSGSGGFTNNRTGRNPGGHGGNRGFGGGGFGGSFYNSDGYGGNYSHS
GS
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggttaccatgacaaccggacaaacgggggctttggaggacgaggaccccctcgcaatg
acagagaaagcagctggacaggacctccaagagaccccgcttacaacagctttggaggac
gttccgatagatccaagccgtcttccttcaatgaccgtggaccaggatcaagaggaaggt
atgaacgtggaggttttcctggtgggggaaactctcgctgggcagatgagcccaaggatg
atgactggtccaaaccaactgctagcaatgagcgcctggagcatgaacttttctctggaa
gcaaccactgggattaattttgagaagtatgatgatatccctgtggaggctactggaacg
aactgcccatcccacattgaaagtttccaagatgtggatatgggagagattataatgggg
aatatcacactgagtcgctacactcgacccacaccagtccagaagtatgctatccccatc
atcaaaagcaagagagacctgatggcttgtgcccagacaggctctggtaagactgctgcc
ttcttgctgccagtgctgagtcagatttacacagatggacctggagatgctctgcaagcc
ataaagagcagtggacaggaaaacggaaggtatgggcgccgcaagcaatacccaatctca
cttgtcctagctccaactagagaactggccttgcagatctatgatgaggcaagaaagttt
gcctaccgctctcgcgtgcgtccctgcgtggtgtacggtggggctgacatcggccagcag
atcagggacttggagagaggctgtcacctgcttgtagccacacctggacgtctggttgac
atgatggaaagaggcaaaattggcctggactactgcaattacctggtcctagatgaggca
gaccgcatgttggatatgggttttgaaccacaaatcagacgcattgtggagcaagataca
atgccacctaagggcatccggcagactatgatgtttagtgccactttcccgaaggagatc
cagattctcgcccgtgactttctggaggactacattttcctggcagtgggccgtgttggt
tccacgtctgaaaatattacacagaaagtagtctgggtggaggagcttgataaaaggtcc
ttccttcttgacctgctcaatgccacaggcaaagactctttgacattggtgtttgtggaa
accaagaaaggtgcagatgcattggaagattttctttaccgtgagggttacgcttgcacc
agcatccacggagatcgatctcagagagaccgagaggaggctctgcatcagttccgctct
ggacgttgccctatattagtggctacagctgtggctgcgaggggcctggacatcagcaat
gtgaagcacgtcatcaattttgatttgcctagtgacattgaggagtacgtccaccgcatt
ggccgtacaggacgtgtaggaaaccttggtctagccacatcattttttaatgacaaaaac
agcaacataaccaaagacttgctcgacctcctggtggaggcaaagcaggggattcccacc
tggcttgagagtttggcctatgagcatcagcacaagagcagcaaccgtggccgttccaag
aggttttcaggtgggtttggcgctagagactaccgtcagtcctctggctccggaggcttc
actaacaaccgtacaggccgtaaccctggaggtcatggaggaaaccgtggatttggtgga
ggtggctttggtggcagcttctacaacagcgatggctacggaggaaattacagccactcc
ggtagt
DBGET
integrated database retrieval system
