Tetraodon nigroviridis (spotted green pufferfish): GSTEN00021923G001
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Entry
GSTEN00021923G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTEN00021923G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tng03041
]
GSTEN00021923G001
Enzymes [BR:
tng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSTEN00021923G001
Spliceosome [BR:
tng03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GSTEN00021923G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
Cas3-like_C_2
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
CAG02734
UniProt:
Q4S9E8
LinkDB
All DBs
Position
undetermined
AA seq
916 aa
AA seq
DB search
MERNFRLYTLVESDRVEDAGRDQREERKKDREKKRKLIRQKKESESSSDNEAPKRNYSER
NDKGDSAKEEDEEEEWEKEERERQQDIEERDAFAERVKQKDKDKTRHIAERTDKKAYEEA
QKRLKMAEDDQRKILPELRKRSRRDYLKKREAEKLEDLEAEIKDEEYLFSTEELTERERK
ELLYKRTLRDLAKDYKKAGAKEEEERKNRYYMPEETRRKDQDAPALSQAELKKQSMQEVR
RSLPIFPYREDLLSAIGEHQILVIEGETGSGKTTQIPQYLFEQGYTRDGKKIGCTQPRRV
AAMSVAARVAQEMSVKLGNEVSRWTKATQSSYAMVNERTHGWRNEPRCLLQVGYSIRFED
CTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILFGLIKDIARFRAD
LKVLVASATLDTERFSRFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVT
QPTGDILVFLTGQEEIEACCEMLQDRCRRLGSKIAELVILPIYANLPSDMQAKIFTPTPP
GARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTPCSRASANQRAGR
AGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSLGINDLVHFDFMDPPP
HETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASEQYKCSNEVLTIAA
MLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYNQWVESGYSTQWCYENFIQF
RSMRRARDVRDQLEGLMDRIEVEVVSSQGDNVPIRKAVTAGYFYHTARLSKGGYKTVKHQ
QTVFVHPNSSLFEELPRWIIYHELVFTTKEFMRQVIEIESGWLLEVAPHYYKSKELEDNS
SKKMPRKQGKAREELG
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggaacggaatttccgtttgtacacgctggttgagagcgacagagttgaggatgctgga
cgggaccagagagaagaaaggaagaaagacagagagaagaagagaaagcttatcagacaa
aagaaagagagcgagtcctcgagtgacaacgaagctcctaaaaggaactattcagaacgg
aacgacaagggggattccgcaaaagaggaggatgaagaggaagagtgggagaaggaagaa
agagagcggcagcaggacattgaagagagagacgcttttgccgaaagagtgaagcagaaa
gacaaggacaagactcgccacatagcggagaggactgacaagaaggcttacgaggaagcc
cagaagaggttaaagatggccgaagatgatcagaggaaaatactgccggagttgaggaag
cgctctcgcagggactatctgaagaagagggaagcagagaagttggaggacttggaagca
gagattaaggacgaggagtaccttttttctacagaggagctgaccgagagggagagaaag
gagttgctttacaaacgcacccttagagacctggcaaaagattacaaaaaggcgggcgcc
aaggaagaagaagagaggaagaaccggtattatatgccagaagagacgcggaggaaggat
caggatgccccggctctgtcccaggcagagctgaagaaacagtccatgcaggaggtgcgg
cgcagccttcccatcttcccctacagagaggacctgctgtcggccatcggcgagcaccag
atcctggtcattgagggagaaacgggctctggaaagaccacccaaatcccacagtatctc
tttgagcagggctacacgagagatggtaaaaagatcggctgtacacagcctcgccgagtg
gcagccatgtcggtggcagccagagtggctcaggaaatgagcgtcaagctcgggaacgag
gtgagccgttggaccaaagccacccaaagttcatacgccatggttaacgagcgtacgcat
ggttggcgtaacgagcctcgttgcctccttcaggtcggttacagtattcgttttgaggac
tgcacttccgaaaggacggtgctcaagtacatgaccgacgggatgctgctcagagagttc
ctgacggagcccgacctggcgagctacagtgtgatcatcatcgatgaggcccacgagcga
acgctccacaccgacatcctcttcgggctcatcaaagacatcgccaggttcagagccgac
ctgaaggtgctggtggccagcgccactctggacaccgagcgcttctcccgtttcttcgac
gacgcacccgtcttcaggatcccgggcaggaggttccccgttgatatcttctacacaaaa
gctccagaagccgattacctggaagcctgcgtggtgtctgtgctccagatccacgtcacc
cagcccaccggggacatcctggtgtttctcaccgggcaggaggaaatcgaggcgtgttgt
gagatgctccaggatcggtgcaggaggctgggctcaaagatcgccgagctggtcatcctt
cccatctacgccaacctgccgtctgacatgcaggcaaagatcttcaccccaaccccacct
ggagctcgcaaagtggtggtggccaccaatatagcagaaacctccctgaccatagacggc
atcatttacgtgattgaccccggcttctgcaagcagaagagctataacgctagaacgggc
atggagtcgctcatcgtcaccccctgctcaagggcttccgccaaccagcgagcgggccgt
gcaggcagggtggctgctgggaagtgcttccggctgtacacggcctgggctttcaaacac
gagatggaggaaacaactgtgcccgagattcagaggaccaacctggggaacgtggtcctg
ctgctgaagagcttaggcattaatgaccttgttcactttgacttcatggacccaccgcct
cacgagactctggtgttggctctggagcagctgtatgctttaggagctctgaaccacctg
ggagagctcaccaagcttggtcgcaggatggccgagcttccagtggaccccatgctgagc
aagatgatcctggcctctgagcagtacaaatgctcaaacgaagtgctgaccatcgcagcc
atgctgtctgtgaacaactccatcttctaccgacccaaagacaaagttgtgcacgccgac
aatgccaggatgaactttgtggtgccgggcggggaccacctggtgctgctgaatgtctac
aatcagtgggtggagagcggatattcaactcagtggtgctatgagaacttcattcagttc
cgctccatgaggagagcccgggatgtcagggaccagctggaggggctgatggaccgtatc
gaggtggaggtggtcagttcccagggggacaacgtgcccattcgcaaggccgtcaccgcc
ggttatttctaccacacggcccgactcagtaagggcggctacaaaacagtgaagcaccag
cagacggtgttcgtgcaccccaacagctcgctcttcgaagagctgccgcgctggatcatc
taccacgagctggtcttcaccaccaaagagttcatgcgccaggtgatcgagatcgagagc
ggctggctgctggaggtggctcctcactactacaagagcaaagagctggaggacaacagc
agcaagaagatgccccgcaagcagggcaaggcaagagaagagctgggctga
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