Tetraodon nigroviridis (spotted green pufferfish): GSTEN00022178G001
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Entry
GSTEN00022178G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12879
THO complex subunit 2
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03013
Nucleocytoplasmic transport
tng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTEN00022178G001
09122 Translation
03013 Nucleocytoplasmic transport
GSTEN00022178G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00022178G001
03041 Spliceosome [BR:
tng03041
]
GSTEN00022178G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
GSTEN00022178G001
Spliceosome [BR:
tng03041
]
Complex C
Other components
EJC/TREX
GSTEN00022178G001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GSTEN00022178G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-ProteinID:
CAG02932
UniProt:
Q4S8V0
LinkDB
All DBs
Position
7
AA seq
1544 aa
AA seq
DB search
MATLIIPGEWIKNWEKSGKSEFVQLCKSLTEKKEHGKEIKDIQAALYELCWQVVQGNLKL
DLVISVLGDTMELRDDMPSILADVFCILDIETSALEEKHRRDHYTQLVGACLVCVPEAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRADQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHVAAALLHHNLIALEDIYVHLMPPDVTIVEEHKRGISE
AKQFARKLVMPVLPTDKNEDKDKDKEDDKNDKLPDNQKLGLLEALLRLGDWHHAQSIMDQ
MPSFYATSHKAIALALCQLVHLTVEPLYRRVGLPKGARGRPFHPLKSKGAPQPTENFEDL
RRDTFSMLGYLGPHLSNDPVLIAKIARLGKAFMKEDTLLSCFLSIADQVLLPSLSLMESN
ACMSEELWGLFKLFPYQHRYRLYGQWKNETYLSHPLLVKVKAQTVERARYIMKRLTKENV
KQSGRQVGKLSHSNPTILFDYMLSQIQWYDNFIVPVVDSLKYLTSLSYDILACILQMDCI
IEALANPQKEKMKHDDTTISSWLQSLASLCGAVFRKYSIELAGLLQYVTNQLKTGKSFDL
LILKEVVQKMAGIEITAEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKEVLVEH
ELALPLCLLMAQHRNGVVFLEGGEKHLKLVGHLYDQCHDTLVQFGGFLASNLSTEDYIKL
VPSIDVLCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNKQQQKNHKYVAACEQV
MKPVHESVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPHAAYEREINKLKAQIREIEEN
AEMPMNKKKKEKERCTALQEKLQEEEKKQTEHVQRVLYRLKLEKDNWLLTKSTKNETITK
FLQLCLFPRCIFSSIDAVYCAHFVELVHQQKTPNFCTLLCYDRVFSAIIYTVASCTENES
HRYGRFLCCMLETVTRWHSDRATYEKECVSYPGFLTVFRATHLEGGNKADQLDYENFRHV
VHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPFYPKVLNLGQALECRVHKICLKEK
EQRPDLYVLAIGYSGRLKSQKVHMVPENEFHHKEQPARNATPANQQNGPGSTGKPASSMS
KTEEGTSEDGDRGKHKSDSATKLMNKANSAAAKVTTSNGNGALNSTKAIKERDDKERSGK
EKKEKKEKTPGSTPENKLDRREKQRDERAAKEERVVREGKEKTPKADREKAKVEEKSSKD
DKVKAMSGEPVELSRERDVLKEPKCKEKGDRSAVTGTLKSPVPRSDPAETERDHKRRKLD
SHSSPSHSSSVKDNSIEPKEATSKQHIIYNSLTRSKSREKEMEKKDTDGMQGRSKEKKEE
KERKERKRDYSVNDRETSQEPKRRKDENGTNSFQNSASPFSDSPLSAEKEKGKRSKSSSK
EKAESVKPERTSSGGKKESRHEKEKAEKKEKRDSTGGKEEKKQY
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacttatcatccctggagaatggatcaaaaactgggaaaaatccggaaaaagc
gagttcgtgcaactctgcaaaagcttgacagagaagaaagagcatggaaaggaaattaaa
gatatacaggcggccctatacgagctctgctggcaggtggtgcagggaaacctcaagctg
gacctggtcatcagcgtgctgggagacaccatggaacttcgcgatgacatgccatccatt
ttagcagacgtcttctgtattctcgatatagagacaagcgcactggaggaaaaacacaga
cgtgaccattatacacagctggtgggagcatgtttggtgtgtgttccagaggccatcctg
aaagaacgcctggatccagagactttggaatctctcggactcataaagcaagcccatcag
ttcaaccagaaaatcgtcaaaattaaaaccaagttgttttacaagcagcagaagtttaac
ttgttacgagaggagaacgagggctacgccaaactgatcaccgagctgggccaggatctg
tcgggcaacatcaccagccacctggttctggagagcatcaaatctctcataggatgtttc
aacctggacccaaaccgcgtgttggacataatcctggaggtgtacgagagccgagctgat
caggacgagttcttcctgtctctgattaagtcctatatgtgtgaacctctcacgctgtgc
cacatacttggctttaaattcaaattctaccaggaacccaatgaggaaaccccgaagtcc
ctctaccatgtcgctgctgctcttcttcaccacaacttaatagcgctagaagatatttat
gtacatcttatgccgccagatgtcactattgtcgaggaacacaaacgaggcatctcagag
gcaaagcagtttgcacgcaagctggtcatgcctgtgttgcccacagacaaaaatgaggat
aaagacaaagacaaggaggatgataaaaatgacaagctgcctgataaccagaagctcggt
ctgttagaagctcttcttagacttggggattggcatcatgcccaaagtattatggaccaa
atgccgtctttttacgccacgtctcacaaggccattgcactggcactctgccagctcgtg
cacctgactgtggaacctctttacagaagggttggccttccaaagggggcgaggggacgc
ccatttcatcctctgaagagcaaaggagcccctcaacccacggagaacttcgaggaccta
cgcagggacacattcagcatgcttggctacctgggtccccacctctccaacgatcccgtt
cttattgccaagatcgcacgtctgggcaaggccttcatgaaagaggacacactgttgagt
tgtttcctgagcattgcagaccaagtgctgctcccttctctctcactaatggaatctaat
gcttgcatgtctgaggagctgtggggtcttttcaaactgtttccataccagcacaggtac
cgattatatggacagtggaagaatgaaacctatctcagtcatccactcttggttaaagtc
aaagctcagactgtggaaagagccagatatatcatgaagcgattgaccaaagagaatgtg
aaacagtctggaaggcaggttggcaagctgagccatagcaatcccaccatcctcttcgac
tatatgctgtctcagattcagtggtacgacaacttcattgttccggtggtggactccttg
aaatacctcacatctctcagctatgacatcttggcttgtatcctacaaatggattgcatc
atcgaggctctcgctaatccacaaaaagaaaagatgaagcatgacgatacaactatttcc
tcatggcttcagagtctggcgagcctgtgtggggctgttttcaggaagtattctattgag
ctggccgggctccttcaatatgtaaccaatcagctaaaaacagggaagagttttgacctg
ttgatcctaaaagaggtagtacagaaaatggcaggcattgaaataacagctgagatgact
tcagagcagttggaggccatgacaggaggcgagcagctcaaagcagagggtggctacttt
ggccagatcaggaacactaagaagtcttcacagcgtctaaaggaggtgctggtggagcat
gaattggctttgccgctgtgtctgctcatggcccagcacagaaatggggtagtattcctg
gaaggtggagagaaacacctgaaacttgttggccacctgtatgaccagtgtcatgacaca
ttggtgcagtttggtggctttctagcctccaatttaagcacagaggactacatcaagctg
gttccctccatcgatgttctttgtaatcagttccacactccacatgacgccgccttcttc
ctgtcccggccgatgtacgcacatcagattttgtcaaagtacgatgagttgaagaaagca
gagaaaggcaacaagcagcagcagaaaaatcacaagtacgtggcagcttgtgagcaggtg
atgaagcctgtgcacgagtctgtggtgtctctccacccagccagagtctgggacgatctc
cgccctcagttctacgccaccttctggtccctcaccatgtacgacctggcagttccacat
gcggcctacgagcgggagattaacaagctcaaggcccagatcagggaaatcgaggagaac
gcggagatgcctatgaataagaaaaagaaagagaaggagcgctgcactgctcttcaggaa
aagctgcaggaggaagagaagaagcagacggagcatgtccagagagttttgtaccgcctc
aaactggagaaagacaactggttgcttaccaaatctacaaagaacgagacgataacaaag
ttcctgcagctttgtctcttccctcgctgcatcttctcttctattgatgccgtgtactgt
gcccactttgttgagcttgtccaccagcaaaagacccctaacttctgtacgctcctgtgc
tacgacagggtgttctctgctattatttacactgtggcgagctgtacggagaatgagtct
caccgctacgggcgcttcctctgctgtatgctggagacagtcactcgctggcacagcgat
cgtgcaacttatgagaaggagtgtgtcagttaccctggtttcctgaccgtcttcagggcc
acacatttagaaggggggaacaaagcagatcagctagattatgagaacttcaggcatgtg
gtgcacaagtggcattacatgctaaccaaagcttcagtacactgcttggagacaggagat
tacacccacattcggaacatcctcatcgttcttacgaagattctgcccttctaccccaag
gttctgaacctgggccaagcactggagtgccgcgttcacaagatctgccttaaggagaag
gagcagagaccagacctctatgtcttagcaattggttattcaggtcgattgaaaagccag
aaggtgcacatggtccccgagaacgagtttcaccacaaggagcagccagcaagaaatgcc
acacctgcaaatcagcagaacggcccagggagcacaggcaagcctgcctccagcatgagc
aaaacagaggagggcacgtcagaggatggtgataggggcaaacataagtctgattcagcc
acaaagcttatgaataaagccaacagtgcagcagccaaagtgaccaccagcaacgggaat
ggggctctcaacagcaccaaagccatcaaagaaagagacgacaaagagcgcagcgggaag
gagaaaaaagaaaaaaaagaaaagaccccaggcagcactcctgagaacaagttggaccgt
agggagaagcagagagatgagagagcagccaaagaggagcgggtggtgcgcgagggtaag
gagaagactccaaaggccgacagggagaaagccaaggtcgaagagaagagcagcaaagat
gacaaggtcaaagccatgagcggggagcctgtggagctgtccagagagcgtgatgttctc
aaggagcccaagtgcaaggagaaaggagaccgcagcgctgtaaccggaaccctcaagtcg
ccagtgcccagatcagacccagccgaaactgagagggatcacaaaaggcgaaagctcgac
agtcactcttctccgtcccactcctcatctgttaaggacaatagcatcgaacccaaggag
gccacgtccaagcaacacatcatctacaactcgctaacccggtcgaagagcagagagaag
gagatggagaagaaagacactgatggcatgcaaggccgatccaaagagaagaaggaagaa
aaggaacgcaaagagaggaagagagattattccgtgaacgatcgtgagacaagccaagaa
cccaaacgtagaaaggatgagaacggaaccaattctttccaaaacagcgcgagccctttc
tccgactcgccgctctcagccgagaaagaaaaaggcaaaagatccaaatcgtccagcaaa
gagaaggccgagtcggtgaaacctgagcgcacctcctccgggggcaaaaaggagtccagg
catgagaaagagaaagcagaaaagaaagaaaagagagacagcactggtggaaaagaagag
aaaaagcaatat
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integrated database retrieval system
