Tetraodon nigroviridis (spotted green pufferfish): GSTEN00023013G001
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Entry
GSTEN00023013G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTEN00023013G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00023013G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
GSTEN00023013G001
U7-dependent histone pre-mRNA processing factors
GSTEN00023013G001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CAG03550
UniProt:
Q4S732
LinkDB
All DBs
Position
14
AA seq
765 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
SAFDKIQQLKYSQIVSLKGKLASKRLFTWSKLPKYVMAFYATGKGHGLSITPLPAGHMIG
GTIWKIVKDVTSTVAHWRALVVLPYLSQTPSMQHMYNHVASSGTRCSLIWRTKDAGLGVY
PLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLTLCHSLADLARVPSPK
VVLCSQPDLESGFSRELFIQWSKDSKNSIILTYRTTPGTLARYLIDNPGEKHLDLEVRKR
VRLEGRELEEYLEKDRIKKEAAKKLEQAKEVDVDSSDESDMDDDDDLDQPTTVKSKHHDL
MMKSEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEIIRLEDFLVPELQATEEEKSKLD
SGLTNGDEPMDQDLSVLPTKCISNVESLEIRARVTYIDYEGRSDGDSIKKIINQMKPRQL
VIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETIDATSETHIYQVRLKDSLVSSLQFCK
AKDTELAWIDGVLDMRVVKVDTGVMLEDGVKEEAEDSELGMEITPDLGIEASSIAVAAHR
AMKNLFGEEEKEVSEESDIIPTLEPLPTPEVPGHQSVFINEPRLSDFKQVLLREGIQAEF
VGGVLVCNNMVAVRRTEAGRISLEGCLCEDYYKIRELLYQQYAVV
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctataatcaagctgacagctgtgtcaggggttcaggaggagtctgcgctctgt
tacctgctgcaggtggatgaattccgcttcctcctggattgtggctgggatgaaaacttc
tccatggacatcattgatgcaatgaaacgatatgttcatcaggttgacgccgtgctgctt
tcccatcctgacccaatacatctgggtgccctgccttatgctgtgggaaaactgggtcta
aattgtaccatttatgccacaattccagtctacaagatgggtcaaatgtttatgtacgat
ctctaccagtctcgaaacaatagtgaagatttcacactgttcacccttgacgatgtggac
tctgcttttgataagattcaacagttgaaatattctcagattgtcagtctaaaaggtaaa
ttggcatccaaacgcttatttacttggtcaaaactaccaaaatatgtgatggccttttat
gcaacaggaaaggggcacggtctctccatcactccccttcctgctggtcacatgatcgga
ggcactatttggaaaattgtgaaggatgtcacctcaacggttgcacattggagagcatta
gtcgtccttccctacttatcacagactccttcaatgcaacatatgtacaaccacgtcgca
agcagcgggacgagatgctccttaatttggaggaccaaggatgctggactgggagtttac
ccattggcacttcttaataatgtcagctacaatgtagtggagttctctaaatcacaggtg
gagtggatgagcgataagctcatgaggtgttttgaagacaagagaaacaacccattccag
ttccgtcacctgactctgtgccatagcctggcagacctggcccgggtacccagccctaag
gtggttctgtgcagccagccagacctagagtctggattttccagagaactgttcattcag
tggagcaaagattccaaaaactccatcattctcacgtaccgcacaactcctggaacgctg
gctcgatacctcatcgataaccctggagaaaagcacctggatctggaggtaaggaaaagg
gtgaggctggaaggaagggagctggaggaatacctcgaaaaggacagaataaaaaaagaa
gcggccaaaaagctcgaacaagcaaaagaggtagatgtggactctagtgatgagagtgac
atggatgacgacgatgacttggaccagccaaccacggtaaaatcgaaacaccacgacctg
atgatgaaatccgaagggagccgaaaaggcagctttttcaagcaagccaaaaagtcttat
ccaatgttcccgacacacgaagagaggataaaatgggatgaatacggggaaatcatcagg
ttagaagatttcctggttccagaattgcaagccacagaggaggagaagagcaagttagat
tcagggttgaccaacggggatgagcccatggatcaggatctctccgttcttcccaccaaa
tgcatctccaatgtagaaagcctggagattcgagcaagggtcacgtacatagattacgaa
ggtcgctctgatggcgactccatcaaaaagatcatcaatcagatgaagcccagacagctt
gtcatcgttcacgggccgccagaagccagcctcgacctggctgagtcatgtaaggccttc
agcaaggacatcaaggtctacacgcccaaactgcaggagaccatagacgctacgagtgaa
acgcacatctaccaggtgcgtctgaaagactccttggtcagctctctgcagttctgcaag
gccaaagacacggagctggcctggatcgacggcgtgctggacatgcgggtggtgaaggtg
gacacgggagtgatgctggaggacggcgtgaaggaagaggccgaggacagtgaactggga
atggagattacccctgatctgggtatagaagccagctccattgcagtggcagcacaccgg
gcaatgaaaaacctgtttggggaagaggaaaaagaggtgtctgaagagagcgatatcatc
cccacactggaaccactgccgactcccgaggttccaggtcaccagtcagtgtttatcaac
gagccccgactgtcggacttcaagcaggtcctgctgagagagggcatccaggccgagttt
gtgggaggcgtgctggtgtgcaacaacatggtggccgtccgcaggacggaggctgggcgg
atcagcctggagggctgcctgtgtgaagactactacaagatccgggagctgctttatcag
cagtatgctgtggta
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integrated database retrieval system
