Tetraodon nigroviridis (spotted green pufferfish): GSTEN00023248G001
Help
Entry
GSTEN00023248G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTEN00023248G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tng03041
]
GSTEN00023248G001
03009 Ribosome biogenesis [BR:
tng03009
]
GSTEN00023248G001
Enzymes [BR:
tng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSTEN00023248G001
Spliceosome [BR:
tng03041
]
Complex A
U2 snRNP components
U2 related factors
GSTEN00023248G001
Complex B
GSTEN00023248G001
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
GSTEN00023248G001
Ribosome biogenesis [BR:
tng03009
]
Eukaryotic type
90S particles
Helicases
GSTEN00023248G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_19
AAA_22
AAA_25
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_7
Motif
Other DBs
NCBI-ProteinID:
CAG03735
UniProt:
Q4S6J7
LinkDB
All DBs
Position
undetermined
AA seq
757 aa
AA seq
DB search
MPALKQMSVHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFSEIITRHQTFVLVGET
GSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIR
FEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQ
RSDLKIIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQI
HMCEEEEGDVLLFLTGQEASEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRI
FEAPPPRKPNGAIGRKVCACLCTASALRCDHWIPDSRLVPPQVVVSTNIAETSLTIDGVV
FVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEM
QASGRLDDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPGELVSTNVSILTTLPFR
ALTIRPPLHPLCAAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIAS
CEFNCSNEILSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNH
ESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRKALCTGFF
MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL
VKIAPQYYDMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctctcaagcagatgagtgtgcaccagcagattaacccgttcaccaacctacca
cacacaccgcgctactacgaaatcctgaagaagcgcttgcagcttcctgtgtgggaatac
aaggagagcttcagtgaaatcatcacacgtcatcagacatttgtcctggttggagaaacc
ggttctgggaagaccacacagatcccccagtggtgtgtggacatggtgaggggtttgccg
ggtccaaagcgtgctgttgcctgtactcagcccaggagagtcgcagccatgagcgtggct
cagagggtggcggatgaaatggacgtgatgcttggacaagaagtcggttactccatccga
tttgaggactgcagctctgccaagacaattctcaagtacatgacagatggtatgttactg
agagaagctatgaacgacccactcttggaaagatatggggtgatcattctggacgaggcc
cacgagcgaactctggccacagatatcctgatgggggtgctgaaggaggtggtccgtcaa
agatctgaccttaagataatcgtcatgagtgctacactcgacgctgggaagttccaggtg
tacttcgacaactgtcccctcctgactattcctggccgcacccacccagtggaaatcttc
tacacccccgaaccagaaagagactaccttgaggcagccatacgtacagtcatccagatc
cacatgtgtgaggaagaggagggcgacgtcctcctcttcctcactggacaggaggcgagt
gaaatcgacgaggcctgcaaacggatcaaacgcgaagtggatgacctcggaccggaagta
ggggacatcaaaatcattcctttgtattccacgttgccgccacagcagcagcagaggatc
ttcgaagctcctcctccacggaaacccaacggtgcaataggaaggaaggtgtgtgcttgc
ctgtgtaccgcctccgctctcaggtgtgatcactggattcctgacagccgcttggttcct
cctcaggttgtggtttcaacaaacatcgctgagacctcgctgaccatcgatggcgtggtg
tttgtcatcgatcccgggttcgccaaacagaaggtttacaacccgcgtatccgggtggag
tcgctgctggtcacggccatcagcaaagcttctgcccagcagagggcagggcgagccggc
aggacacgcccagggaaatgcttccggctctacacagagaaggcttacaaaaccgagatg
caggcgagtgggagacttgacgataacacatacccggaaatccttcggtctaacctggga
tctgtggtgctgcagctgaagaagctgggtatcgatgatcttgtgcactttgacttcatg
gatccaccaggtgagttggtctctacaaatgtgagtattctaacaacactccctttccgc
gctctgaccatccggccccccctccaccctctctgtgcagctccggagaccctgatgaga
gccctggagctgctgaattacctggcagctctcaacgacgacggtgacctgacagagttg
ggctccatgatggcagagttccctctggacccacagctagccaaaatggtcattgccagc
tgcgagttcaactgctctaatgagattctttccattactgccatgctgtcagtcccacag
tgttttgtccgccccacggaggctaagaaggcggctgatgaggccaagatgaggtttgct
cacatcgatggagaccatttgacactgctcaacgtttatcacgcctttaaacaaaaccac
gagtccaaccagtggtgctacgacaactttgttaactatcgatcgttaatgtctgccgac
aacgtgcggcagcagctgtccaggatcatggatcgcttcaacctgcctcgccggagcaca
gaattcaccagcagggattactacatcaacattcgcaaagcgctctgcactggtttcttc
atgcaggtggctcacctggagcgcacaggtcattatctgacggtaaaagacaaccaagtt
gtccagctgcacccgtctacagtcctggaccataagcctgagtgggttctctacaacgaa
tttgttctgactaccaaaaactacattcgcacttgtacagacatcaaaccagagtggctg
gtgaaaattgctccccaatactacgatatgagcaacttcccgcagtgtgaagctaaacga
cagctggagcggattatcgccaaactagagagcaaagaatattcccagtac
DBGET
integrated database retrieval system
