KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00024517G001
Entry
GSTEN00024517G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:tng00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tng03041]
    GSTEN00024517G001
Spliceosome [BR:tng03041]
 Complex B
  Other components
   Complex B specific factors
    GSTEN00024517G001
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_ACSF4 NBCH_WD40 Ge1_WD40 LisH_TPL WDR90_beta-prop_4th Beta-prop_Nup120_160 Beta-prop_VPS8 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_BBS7 Beta-prop_SCAP Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_IP5PC_F DUF7165 VPS8_N LisH LisH_PAC1 PROPPIN LisH_WDR26 zf_topless Beta-prop_IFT122_2nd PA14
Other DBs
NCBI-ProteinID: CAG04705
UniProt: Q4S3S7
LinkDB
Position
20
AA seq 504 aa
VVRLIMQYLKENNLQRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLP
DKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPR
EAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPPGTTIDLFRG
KAAVKDVEEERFPTQLSRQIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEVWNFTTGKIR
KDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKG
VTCVSFCKDSSQLLSTSFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTPDGHHIISASS
DGTVKVWNMKTTECTNTFKPLGTSAGTDITVNNILLLPKNPEHFVVCNRSNTVVIMNMQG
QIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIG
IAHHPHQNLISTYSEDGLLKLWKP
NT seq 1515 nt   +upstreamnt  +downstreamnt
gtggtacgtctgatcatgcagtatttgaaggaaaataacctgcagaggactctggccacc
ctccaggaggagaccacggtttctctgaacaccgtggacagcatagagagcttcgtggcg
gacattaacagcggccactgggatacggtcctgcaagctatccagtccctcaagctgcca
gataagaccctgatcgacctctatgagcaggtggtgttggagctgatcgagttgagagag
ttgggtgcagcccggtccctcctccggcagactgaccccatgatcatgctgaaacagacc
cagccagagagatacatccacctggagaacctactggcccgttcctactttgacccgcgt
gaggcctacccggacggcagcagtaaggagaagcgccgcgcagccatcgcacaggccctg
gcgggggaggtcagcgtggtgcccccctctcgtctgatggctctgctggggcagtctctg
aagtggcagcagcatcagggtctcctcccgcccgggaccaccatcgacttgttcagaggt
aaagcggccgtgaaggatgtggaggaggagcgtttccccacccagctcagcagacagatc
aagtttgggcagaaatctcacgtggagtgttcccggttctcccctgatggccagtacctg
gtcaccggctctgtggacggcttcattgaggtgtggaacttcaccacggggaaaatcaga
aaggacctgaagtaccaggctcaggacaacttcatgatgatggacgatgccgtgctgtgc
atgtgcttcagcagagacacggagatgttggccaccggcgcccaggatgggaagatcaag
gtgtggaagatccagagcggccagtgcctgaggaggttcgagcgagcgcacagtaaagga
gtcacgtgcgtcagcttctgtaaggacagcagtcagctcctcagcacctccttcgaccag
accatcagaatccacgggttgaagtcggggaaaaccctgaaggagttccgcggccactcg
tcctttgtgaacgaggccaccttcaccccggacggccaccacatcatcagcgcctcctca
gacgggacggtcaaggtgtggaacatgaagaccacggagtgcaccaacaccttcaagcct
ctgggcacgtccgccggcaccgacatcacggtcaacaacatcctcctgctgcccaagaac
cccgaacacttcgtggtgtgcaaccgctccaacacggtggtgatcatgaacatgcagggc
cagatcgtgaggagtttcagctccggtaagagggaagggggtgactttgtgtgttgcacg
ctgtctccccgtggagagtggatctactgcgtgggagaggactttgtgctctactgcttc
agcaccgtcaccggcaagctggaacgaacgctcacggtccacgagaaggacgtgatcggc
atcgcccaccacccccaccagaacctgatcagcacctacagcgaggacggtctgctgaag
ctgtggaagccctga

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