KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00024793G001
Entry
GSTEN00024793G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTEN00024793G001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tng03041]
    GSTEN00024793G001
Spliceosome [BR:tng03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    GSTEN00024793G001
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40 WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st NBCH_WD40 PRP4 Beta-prop_EML Beta-prop_Aladin WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR41 Ge1_WD40 WD_LRWD1 Beta-prop_Vps41 Beta-prop_IFT140_1st WD40_like Beta-prop_WDR11_1st Beta-prop_WDR19_1st Beta-prop_SPT8 WD40_RFWD3 CAF20
Other DBs
NCBI-ProteinID: CAG04933
UniProt: Q4S349
LinkDB
Position
4
AA seq 506 aa
MSDDEDFAPAVKRSRVFYGSLEEKERERLSSEATGTSNAVKVGIEAGNINISSGETLELE
DRVSERQQEALAAFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLRNV
LSVVGPDALKKSRRDDERGKRAHDECQQTWYHEGAASLKDARIWLAKYSLPRAVKRLETA
RAQKVVAEATKVIKQQELHKSLRNLNNFCSQIGDSRPISFCHFSPDSKMLATASWSGLCK
LWSVPDCSLIRTLRGHNTNVGAVVFRPQAGISLHPSDVNLASCAADGSVKLWSLESDEPV
ADIEGHTERVSRVTWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDIHFHPD
GSLAATGGLDSFGRVWDLRTGRCVVFLEGHLKELYSVNFSPNGYHLATGSGDNSCKVWEL
RNRKCLYTIPSHQNLISAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKVM
GVDVSPDGKLIATSSYDRTFKLWLSE
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtcagacgatgaagattttgctccggccgttaaaaggagtcgtgttttctacggaagc
ctggaggaaaaagagcgagagcggctgagctctgaggccacaggcaccagcaatgcagtc
aaagttggcatcgaggctggaaacatcaacatttcttcaggcgagactctggagttggaa
gatcgtgtcagtgaaaggcagcaggaggctctcgctgcgtttgagcgtcggcgaagagcc
aggcagatcacagtctctacggatgatgccgaggtgaaagctggcctccgagcgcttgga
gagccgatcacactgtttggtgagggaccagctgaccgacgggagaggttgcggaatgtt
ctgtctgtagttgggcctgatgctctaaagaagtccaggagagatgatgagagaggcaag
agggcacacgacgagtgccagcagacgtggtaccacgaaggcgccgcctctctgaaggat
gctcggatctggctggccaagtactctctgccgcgggccgtgaagcggctggagactgcg
cgagctcagaaggtggttgccgaggcaaccaaggttatcaaacaacaggaactgcacaaa
agtctgaggaatctcaacaacttctgcagccagattggagattctcggcccatcagcttc
tgccacttcagccccgactccaaaatgctggccacagcctcctggagcggtctctgcaag
ctgtggtcggtccccgactgcagcctgattcgtaccctcagaggacacaacaccaacgtg
ggagccgtcgtcttccgcccgcaggccggaatctccctccacccatccgacgtcaacctg
gcatcgtgtgctgcggatggatccgtgaagctctggagcctggagagtgatgagccggtg
gcggatattgagggccacactgagcgggtgtcacgagtgacctggcatccctccgggagg
ttcctgggaacgacctgctatgacaactcgtggcgtttgtgggacctggaggttcaggag
gagatcctgcatcaggaaggccacagtaaaggagtccatgacatccacttccaccctgac
ggatcactggccgccaccgggggcctggactcctttggccgggtgtgggacctgcggaca
ggacgctgcgtcgttttcctggagggacacctgaaggagctttacagcgtgaacttctct
cccaacgggtatcacctggcaaccggaagtggcgataactcgtgtaaggtttgggagctg
aggaacaggaagtgtctctacaccatcccctcgcaccagaacctcatctccgcggtccgc
ttccaacccacggacgggcacttcctcctgaccggagcgtacgacaacacggccaaggtt
tggagtcacccgggctggacgccgttgaagacgctggcgggacacgagggcaaggtgatg
ggcgtggacgtgtcccccgatgggaagctgatcgccaccagctcctacgaccgcaccttc
aaactctggctgtcggagtga

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