Tetraodon nigroviridis (spotted green pufferfish): GSTEN00024794G001
Help
Entry
GSTEN00024794G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
GSTEN00024794G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tng03009
]
GSTEN00024794G001
Ribosome biogenesis [BR:
tng03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
GSTEN00024794G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
WD40_RFWD3
WD40_like
Motif
Other DBs
NCBI-ProteinID:
CAG04934
UniProt:
Q4S348
LinkDB
All DBs
Position
4
AA seq
1013 aa
AA seq
DB search
MPDNKSLAGGGSSLFSGFRVLGLYSNHVPHAVRYHQKHREFYLVTAVGKSFHTYNVNRLG
IVAVSNSLLEDISYLAADRMLVFVAAGKLISAFARNKEVVMRYQEHKHEVRLLLPLGDHL
VSADSGGDVIVWDVQGGDIYLRLEFNPASFDVSAMMHPSTYLNKVLFGSSQGALQLWNIK
TSKLLFTFPGWSAGVTVLQQSPAVDVVGVGTATGRIIIHNIRLDETLMSFTQDWGPVTSL
AFRTGTGGSPPLSLTHAHAHTHTHTRILGVSFFVRRSSDCGVRQPSGSHCFLGSGAPSDC
HTAETRPQHRRCRGNLSARRAAADHHRSRQRHQGKATTCNVLLHQETLHITAAFPINTHF
YSHGYVEMLLLIFLFLIYLRLSDSRYGYLTRKGAGPDYLEVGRATAPLPPPSVTMATMEK
TSSVQVRTGRCSPSPPSTSVSTRTWVTVGVSQDQSAWFGAELLLPRVSNQTVFSGSGSIN
KKKEKKKKKGLSYEELRLPAITAFTSATARQSDWDGIAACHRGRRAATTWNYQRCTMGAH
QLQPPAVCRDAVATAVDVTSCGNFAVIGSSSGRVDVYNMQSGLHRGCYGDDGTAHSGAVR
GVAVDALNQLTFTSGSDWLLKFWCFKSKKQEEQLQLGAAAAGMKLHRESGMLALALDDFT
VLVVDTETRRVVRKFAGHRGNVNDMTFSPDGRWLVTVAMDCTIRTWDLPSGSLVDCFLVA
MAPVSVSMSPTGDFLATAHVDSLGVYLWTNKSLCGPVGLRPLPADYQPTETTLPGVTAEE
PEQEVTSEDVDDAYQSAEQLGAELVTLSLLPESRWKSLLHLDVIKRRNKPVAPPAAPAAA
PFFLPTLAGLTPRFAALSEAEGENQSKVVSLGSLAERSEFASALEASLQSGSFDLPLRLL
KDSGPSAISMELTNLAPEGGGASSLLLAFIQMIDSMLASGRDFDLAHGYLALFLKFTNFS
AFFQLHLRLLSQDAVAMEALLRLSSRLEDGWAGLRASFDQSLCLLSYAKSALL
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgcccgataacaagagtcttgcgggcggcgggagttcgttgttctccggttttcgggtt
ttggggctttattccaaccacgtgccccacgcggtgcgctaccaccagaagcaccgggag
ttctacctggtcacagcggtcggcaaaagtttccacacctacaacgtgaacagactgggg
attgttgctgtcagtaacagcctcctggaagacatcagctacctggcggctgaccgaatg
ttggtgtttgttgctgctggaaaactcatcagcgcctttgccagaaataaagaggtggtg
atgcgctaccaagagcacaaacatgaggtgcgcctgctgctccccctgggtgatcacttg
gtctctgctgacagtggcggcgatgttattgtttgggatgtccaaggaggagacatttac
ttgcggctggagtttaacccggcctcctttgacgtgtcggccatgatgcatcccagcacc
tacctgaataaggtgctgtttggaagctcccagggtgccctgcagctttggaacattaag
acaagtaaattgctgtttacgttccccggttggtcagcaggggtcactgttctgcagcag
agccccgctgtcgacgtggtcggtgttggtacggcaaccggacgcatcatcattcacaac
atccgattagacgagacgctgatgagtttcacacaagactggggaccggtcacctcgctg
gctttcagaacaggtacaggtggcagtccgcctctttctctcacacacgcacacgcacac
acacacacacacacacgtatactcggtgtgtctttcttcgtcagacggtcctccgattgt
ggcgtccggcagccctcagggtcacattgctttctgggatctggagcgccgtcagattgt
cacacagcagagacacgtccacagcaccgccgttgccgcggcaacctttctgcacggaga
gccgctgctgatcaccaccggagccgacaacgccatcaaggtaaagccaccacctgtaat
gtcctcttgcaccaagaaactctccacattacagctgcatttccaataaacacacatttt
tattcacatggttatgttgaaatgttgcttctgatttttcttttcctcatttatctccgt
ttatcggattccaggtatggatatttgaccaggaagggggcggggccagactacttagaa
gtcggcagggccacagcgcccctcccaccaccatccgtcaccatggcaacgatggaaaaa
acatcctcagtgcaggtcaggacgggacgctgcagtccttctccaccgtccacgagcgtt
tcaacaagaacctgggtcacggtcggtgtcagccaggatcagtccgcctggttcggagca
gaactgctgctcccgcgtgtctccaatcaaaccgtcttctctggctcaggatccattaac
aagaagaaggagaagaagaagaagaaagggttgtcctacgaggagctccgccttcccgcc
atcacggcgttcacatctgccacggcgcgtcagtccgactgggacgggatcgccgcctgt
caccggggccgccgagcggccaccacgtggaactaccagcggtgcaccatgggagctcac
cagctgcagcctccggcggtctgcagggatgccgtcgctaccgccgttgacgtcacctct
tgtggcaactttgcggtcatcggctcctcatccggccgcgtcgacgtctacaatatgcag
tctggcctgcaccgcggttgctacggcgatgacgggacagcccacagcggggcggttcga
ggcgtggccgtcgacgccttgaaccagctgacgttcacctcaggctctgattggctgctc
aagttctggtgcttcaagagcaaaaaacaagaggagcagctgcagctgggagctgcagcg
gctgggatgaagctgcacagagagagcgggatgctggcgttggcgctggatgacttcacc
gtgctggtggtcgacacggaaaccagacgggtcgtcaggaagttcgccggtcaccgtggc
aacgtcaacgacatgactttcagccccgatggccggtggctggttaccgtggcgatggac
tgcactatccgcacgtgggacctcccctctggaagtcttgtggattgtttcctcgtcgct
atggcgccagtgagtgtgtccatgtcaccgaccggagacttcctggccacggctcacgtg
gacagtctgggcgtttacctctggaccaacaagagtttatgtgggcccgtcggcctccgg
cccctcccagcggactaccaaccgacggagaccaccctgccgggggtgacggcggaggag
ccggaacaggaagtgacctcagaggacgtcgatgacgcttatcaatcagctgagcagttg
ggggcggagcttgtgacgctctcgctgctgccggagtctcgatggaaaagcctgctgcac
ctggacgtgatcaagaggagaaataagccggtagcgccccctgctgctccggccgccgca
cctttcttcctgccaactcttgctggtctgacgccgcgcttcgcagccctgtcggaggcc
gaaggggagaaccagtccaaggtggtgagtttgggttcgctggccgagaggtccgagttc
gcgtctgctctggaggcgtctctccagtctggctcattcgatctgccgctgcgactcctg
aaggattccggaccatcggccatctccatggagctcaccaacctggcgccagaagggggc
ggagccagcagcctcctgctggccttcatccaaatgattgacagcatgctggccagtggg
cgggacttcgacctggctcatggttacctggcgcttttcctgaagtttacaaacttttct
gcttttttccagcttcacctccggctgctgtcgcaggacgccgtcgccatggaagccttg
cttcgcctctcgtctcgtctggaagatgggtgggcggggctacgggcatcatttgaccaa
tcgctgtgtttgctgtcgtatgctaagagtgcgttactt
DBGET
integrated database retrieval system
