Tetraodon nigroviridis (spotted green pufferfish): GSTEN00025748G001
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Entry
GSTEN00025748G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
tng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTEN00025748G001
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00025748G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00025748G001
03041 Spliceosome [BR:
tng03041
]
GSTEN00025748G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00025748G001
mRNA degradation factors
5'-3' decay
Lsm complex
GSTEN00025748G001
Spliceosome [BR:
tng03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GSTEN00025748G001
Complex C
U2 snRNP components
GSTEN00025748G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-ProteinID:
CAG05652
UniProt:
Q4S130
LinkDB
All DBs
Position
1
AA seq
135 aa
AA seq
DB search
QLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVRDC
IIRGSVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVCVCVCVWGGGLSWIINSLS
YVLIWLKVATFGSAI
NT seq
408 nt
NT seq
+upstream
nt +downstream
nt
cagcttttctactcgttttttaagtcactggtcgggaaagatgtggtggtggagctcaaa
aacgacctgagcatttgtggtacacttcattccgtggaccagtatctgaacataaagctg
acagacatcagcgtcacagacccagagaaatatcctcacatgctgtctgtgagagactgc
atcatccgtggatctgtggtccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgt
gtgtgtgtgtgtgtgtgtgtgtggggtgggggtctttcatggattataaatagtctgagt
tatgtcttgatttggttgaaagttgctacatttggttctgctatttga
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