Tetraodon nigroviridis (spotted green pufferfish): GSTEN00026288G001
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Entry
GSTEN00026288G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K07573
exosome complex component CSL4
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00026288G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00026288G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GSTEN00026288G001
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
GSTEN00026288G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-ProteinID:
CAG06056
UniProt:
Q4RZX6
LinkDB
All DBs
Position
18
AA seq
192 aa
AA seq
DB search
MSAKVCIPGEKLCSAEDCIPGPGVYLRHGHIHSSLAGYVIRKTEGKELPMISVVRGTESQ
LLPDVGAIVTCKVTSINPRFAKVHILKVGSTSLKDHFRGTIRKEDVRATEKDKVEIYKSF
RPGDIVLAKVMSLGNVESSYLLTTAENELGVVVAHSESGAVMVPISWSEMQCPLTYAKEF
RKVARVQAKHLE
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaaagtgtgtataccaggtgaaaagctgtgcagtgctgaagactgtattcca
ggcccaggggtttacctacggcatggccacatacactcctcgctggcgggctatgtcatt
aggaaaacggaggggaaggagttacccatgatctccgtggtcaggggaacagaatcacaa
ctgctgccagatgtgggagctatcgtcacctgtaaggtgaccagcatcaacccaagattt
gccaaagtccacattttaaaagttggatctacgtcattgaaggaccacttcagaggaaca
atcagaaaagaagatgtccgtgcaacagagaaagacaaggtggagatttacaaaagcttc
aggcctggggatattgttctggcaaaagttatgtctctgggcaacgtggagtccagctac
ctgttgacaacagcagagaacgaactgggagtggtggtggcacacagcgagtcaggcgcg
gtgatggttccaatcagttggagtgagatgcagtgcccgctcacttatgctaaggagttc
cgtaaagtcgcacgagtgcaggccaaacatttggag
DBGET
integrated database retrieval system
