Tetraodon nigroviridis (spotted green pufferfish): GSTEN00027369G001
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Entry
GSTEN00027369G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14962
COMPASS component SWD2
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTEN00027369G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00027369G001
03036 Chromosome and associated proteins [BR:
tng03036
]
GSTEN00027369G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
GSTEN00027369G001
Chromosome and associated proteins [BR:
tng03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
GSTEN00027369G001
COMPASS/SET1 complex (yeast)
GSTEN00027369G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_HPS5
Motif
Other DBs
NCBI-ProteinID:
CAG06868
UniProt:
Q4RXL4
LinkDB
All DBs
Position
11
AA seq
317 aa
AA seq
DB search
LRSFRVARIYRKNSQKINCVDFSQNGENAVTSSDDDCIVLYDLLEGKVAGTLFSKKYGVD
LIRYPHGDRETVVYSSNKLDDTIRYLSLTDNKYIRYFPGHTASVTALSMSPVDGTFLSSS
LDLTIRLWDIRSQNCQGLTSTLGKPICSFDPEGLIFAASVDSKSVDLYDLRAYDKGPFAH
FETKFSRVCDWTRIAFSNDGRQILISTNGGMIRVLNAFSGAILHTFSGYNNSKGLSLEAC
FTPDSQFVMIGSEDGRVHVWSTESGMKVAVLDGKHPGPISSLQFNPRYMTFASACTSTVS
SDIICFTFTPAWPTYKT
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
ttacgaagtttcagggttgctagaatttatcgtaaaaattcccaaaagatcaactgtgta
gactttagccagaatggtgaaaatgcagtaacaagcagtgacgacgactgcattgtgttg
tatgacctcctggaaggaaaggttgcagggaccctttttagcaagaagtatggagtagat
ctgattcgttatcctcatggagaccgtgaaaccgtggtctacagctccaacaagctggac
gataccattcggtatttgtcgctgaccgacaacaagtacatcaggtatttccctggacac
actgcaagtgtgactgcgctgtccatgtcaccagtagatgggaccttcttgtccagctca
ttagatctgaccatccgcctctgggacatacgctctcaaaactgccagggtttgaccagt
actctggggaaacccatctgctcctttgaccccgaagggctgatatttgctgccagcgtg
gattctaaatctgttgacctctacgaccttcgtgcctacgataagggtccatttgcccac
tttgagacaaagtttagtcgtgtttgcgactggacaagaatcgcattcagtaacgacggg
agacagattctcatttccaccaacggagggatgattcgcgttctgaatgctttcagtggt
gccattctacacactttttctggctataacaacagtaaagggttgtccctggaggcgtgc
ttcactcccgactcgcagtttgtcatgatcggctcagaggacgggagggtccacgtctgg
agcacggagagtgggatgaaggtggctgtgctggacgggaaacatccgggtcccatcagc
agtctccagtttaaccccagatacatgacctttgccagtgcttgtacctccacggtgagc
tcagacatcatctgctttacatttacacctgcttggccaacatataagacctaa
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