Tetraodon nigroviridis (spotted green pufferfish): GSTEN00028266G001
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Entry
GSTEN00028266G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00028266G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00028266G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
GSTEN00028266G001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-ProteinID:
CAG07559
UniProt:
Q4RVM3
LinkDB
All DBs
Position
9
AA seq
550 aa
AA seq
DB search
PSLFSLLQYGLGTVVSATKASAGLPQAGDEYDFYRSFTGFQDFCESQGDNLLRCMSQIMK
HHGCRSHMMNQNTLTGQEDRFDLMVDSNDAILERVGILLDEADGVNRTQGPVMPAGFQPP
KIVVSSWNRKGSGSGGRSEMFRLLHAKNVARPQLKFKEKVDNSNTPFIPKIFIKPNAVKP
LPSYFTNKQMHKEKPEDLDVPAALADFIHQQRTQENVVDMCAHPYQYELDHLMIPESLLS
KSEPQLYKPVAETKCSFITTLEELAALNEKLCQLSEFAVDLEHHSYRSFLGITCLMQIST
REEDFIIDTLELRSEMYILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLFDTHQAS
RALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARADTHYLLYIYDCVRA
QLLDFNHGQPGLLKSVWDRSRDISLKKYMKPIFTEESYLELQRKQKKSFNTQQLAAFRLL
FAWRDKLARQEDESTGYVLPTHMMIKISEELPKEPQGIIACCNPVPPLVRQQVNELHLLV
QQAREMPLLK
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
ccttcactcttctctcttcttcagtatggattgggcactgtggtatctgcaacaaaagca
tctgccggtttgccccaagccggagatgaatatgatttttatcgcagtttcacaggcttc
caggatttctgtgaaagtcaaggagataacctcttacgctgcatgagtcagatcatgaag
caccatggatgcagatcacacatgatgaatcagaacaccctgactggacaggaggacagg
ttcgacctaatggtggactcgaatgatgccatcctggaaagagtggggattctgctcgat
gaagctgatggcgtgaaccggacccaggggcccgtcatgcctgcagggtttcagcctcca
aagatcgtcgtgtccagctggaatcgcaagggttcaggctccggtggccgttctgagatg
ttccgtctgcttcatgccaagaacgttgcaaggccacagttaaaattcaaggagaaagtt
gacaacagcaacacaccttttattcccaaaatcttcatcaaaccgaatgccgtcaaacct
cttccgtcatatttcaccaacaaacagatgcacaaggagaaacctgaagacctcgacgtc
ccggccgcactggctgacttcatccaccagcagagaacacaggaaaacgttgttgatatg
tgtgctcacccctaccagtatgaactggaccatttaatgataccagaaagcctcctgtct
aagtcggaaccacagctgtacaaaccagtggcggagaccaagtgctccttcatcaccacg
ctggaggagctggcggctctgaacgagaagctgtgtcaactgtccgagtttgcagtggat
cttgagcaccactcctaccggagcttcctgggcataacctgtctgatgcagatctccacc
agagaggaggacttcatcatcgacactttggagctccgcagtgagatgtacatcctgaac
gaggctttcactgacccggccattgtcaaggtatttcacggtgccgactcagacatcgag
tggctccagagggacttcggcttgtacgttgtccggctttttgacacgcaccaggccagc
cgggctctgaatctggccagacactctctcgatcatctgctcacacacttctgcaacgtg
gcctcggataaacgctaccagctcgccgactggaggatccgccccctgccagaggagatg
gtgcagtacgcccgcgcagacacccactacctcctctacatctacgactgtgtgagggcg
cagctgctggacttcaaccacggccagcccggccttctgaagagtgtctgggacagaagc
agagacatttccctgaagaaatacatgaagcccatattcactgaggagtcgtatctggag
cttcagaggaagcagaagaaatctttcaacacccagcagctcgctgctttcagactgctg
tttgcctggagggacaagctggccaggcaggaagatgaaagcaccggatatgtcttacca
acacatatgatgatcaagatatctgaggagctgcccaaagagccccagggcatcatcgct
tgctgtaaccctgtacctccactggtgagacagcaagtcaatgaactgcatttactggta
caacaagccagggaaatgcctctcctgaag
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