Tetraodon nigroviridis (spotted green pufferfish): GSTEN00028603G001
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Entry
GSTEN00028603G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K08736
DNA mismatch repair protein MSH3
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GSTEN00028603G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tng03400
]
GSTEN00028603G001
DNA repair and recombination proteins [BR:
tng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
GSTEN00028603G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
Mo-nitro_C
Motif
Other DBs
NCBI-ProteinID:
CAG07808
UniProt:
Q4RUX4
LinkDB
All DBs
Position
12
AA seq
633 aa
AA seq
DB search
MNTVTEFYCHSQEQGCRSLSSVASLESPVICCLGPLIQYLREFNLERVLRSESSFQHLSS
ASGGMTLNAATLRNLEILNNQTDGRVKGSLLWVLDHTRTRFGRRMLRKWVSQPLTDTESV
LRRLDAVQEILESNCSPLNSVRSLLSHLPDLDRGICGIYHRKSSTQEFYIICSSLARLSL
ELQALLPAIRSQVQASLLQGLLLDTPDLLAPAQSFLKVLNEKAAKSGNKTELFSDLSAFP
VLQERRKQIQEVIDEIHYHRKEIRLILKAPAFDYTTVSGQEFLIEVKNSLSSTVPPEWVK
VSSTKAVSRYHTPLLVERYKKLLQLREQLLLDCQTEWIHFLDQFGEHYHLMKRAISHLAT
LDCLFSLAEVAKQGDYCRPEVSENCRQIVIRDGRHPAIDLLMGENNQYVPNVTELQGEGK
RTMIITGPNMGGKSSYIRQVALICVMAQMGSYVPALQAQLGMLDGIYVRMGASDNIFQRR
STFMEDVREASEIVSRATERSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKALTLFVT
HYPPLCELERVYPEHVSNYHMAFLLNEPDVAADTDGAEVAPEFITFLYQLTQGAAGRSYG
LNVARLADIPDPILHTAARKAQELESTVNARRY
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagtcacagagttctattgtcacagtcaggagcaaggctgccgctcgctctca
agtgtagcttccctggagagcccggtgatctgctgtctgggtccactcattcagtatctg
agagaatttaacttggagagagttctcagaagtgagagctccttccagcacctgtccagc
gcatcaggaggaatgacactcaatgccgctacgctcaggaacctggagatcctcaacaac
cagaccgacggcagagtgaagggcagtctgctgtgggtgctggaccacactcgcactcgt
ttcgggaggagaatgttgaggaagtgggtgagccagcccctcacagacacagagtctgtt
ttacggcgactggatgctgtgcaggagatcctggagtcaaactgttcccccctgaattca
gtcagatcccttctgtcacacttgcccgacctggacagaggcatctgtggcatttaccac
aggaagtcttccactcaagaattttacatcatctgtagcagcctcgctcgcctgtcactg
gagctgcaggctttgctcccagctatcaggtcccaggttcaggcttctctcctccaagga
cttctgctggacactccagacctacttgctccagctcaaagtttcctcaaagtgctcaat
gaaaaggcggctaagtcaggaaataagacggagctgttctcggacctgtctgccttccca
gtgctgcaggaaagaaggaaacaaatccaggaagtcatcgatgaaatccattaccaccgc
aaagaaatcaggctaatactgaaggccccggcattcgactacaccacggtttcgggacag
gagtttctgattgaggtgaagaactcgctgtcgtccactgttccacctgagtgggtcaaa
gtcagcagcaccaaggcggtcagcaggtatcacactcctttactggtggagcgctacaag
aagctgctgcagcttcgagagcagctgctgctggactgccagacagagtggatccatttt
ctagaccagttcggggagcactatcacctcatgaaaagggctattagtcacctagcaacg
ctggactgcctcttttcattggctgaggtggctaaacaaggggactattgcagaccggag
gtatctgaaaattgccgtcagattgtgatccgggatggtagacatcctgccatcgatctc
ctgatgggagagaataaccagtatgtgcccaacgtcactgaactgcagggtgaaggcaag
agaactatgataattactggccccaatatgggaggcaagagctcctacattcgtcaggtg
gccctgatctgtgttatggctcaaatgggctcttatgttccagccttacaagcccagctg
ggcatgttggatggcatttatgtcaggatgggagcctcagacaacatcttccaaagacgc
agtaccttcatggaggacgtgcgcgaggcctcagagatcgtttcccgggcgaccgagcgt
tccttggtcattctggatgaactgggacgggggacgagcacccatgatgggatcgccatc
gcttatgccacgctggagtacttcatcagagacgtcaaagctctcacactgtttgtgact
cattaccctcctctgtgtgagctggagcgtgtgtatcctgaacatgtgtctaattaccac
atggcttttctgctcaacgagcccgacgtagctgctgacacagatggcgcagaggttgcg
ccagagttcatcactttcctgtaccagctgacccagggggctgcagggcggagctacggc
ctcaacgttgcccgattggcagacatcccagatccgattctgcacacagcagcacgcaag
gcccaggagctggaaagcacggtcaacgccaggaggtac
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