Tetraodon nigroviridis (spotted green pufferfish): GSTEN00029408G001
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Entry
GSTEN00029408G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tng04131
]
GSTEN00029408G001
Membrane trafficking [BR:
tng04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
GSTEN00029408G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-ProteinID:
CAG08424
UniProt:
Q4RT58
LinkDB
All DBs
Position
12
AA seq
2972 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLTNLEINENALSQLDIPFKVKAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPLASIKYDAEKEEKQLQEARQRKLQQIET
KLTAGDQENSTLEKQDTFVEKLVTQIIKNLQVQISNIHVRYEDNVTNPDSPLSIGVSLKN
LSLQLVRLDNLFAYLNVNSVLFSNYGTEEALLSLQSSMEVYNSDSSNHDFSECHPITFLH
IKSSTQSKVLSFGIHWEFYGINLTKVLICALVFRPISVDAKLQMNPRSDVDFSRPKTDLT
VNLSEVAIELNRLQYVSILELLGSVYMMSRNLPYRKYRPIVQVHRNAPIWWNYAITSVLE
VDVKPRLHMWSWQHIRCHRQMVKFYKDLYKTKITSKKPTEELLKALQEPEKTLDIFNITL
ARQQAEVEASKAGLCIYRPGMKMEEEQSQGWLSWMWNWGGEAEKPKEVKTGGFDELLTPA
EKAKLYTAIGYSETDVNHNLPKNITVNTMSEFFKPPGDVQLDELTNATLMKLEQFRDRTA
TGQFLVLIKTLVMTVQRSHSSVSCYLFHPAELSKIMSRAYDSFEVQLSNLQLLYSKPEED
LFYDAPSSPIGDQPFFPDNPLPLRYADLHKRSLVKEDVPKNMTDFIMTFVINMFSVQLCR
LSGDQEITVLHLDVENLGTELKINTFDMTSNTYLREICLKCPEYMDSENKPVQLLTTLDN
SEVDLIVNTPFTPFQHVPVVKIAMLNFLQVTFSSLDVHLHTEALLNAMNFLNNLLPPSTK
KEGGQEELPTIPEEDETEKEEEKMMEPVVTKKKYVVNLHIRADLRCLKVFIRGQKARISE
IIIEGLVSQVLMKKKEMEVQANLKSIVILDCNQDAFYKKAVSIADKEVFAFQMVNYTNAT
EGDAYLDMSKVDTAVTLNVGCIQVIFLNKFVSTILAFINNFQEAKDALMEVTAQAAEKAA
TGVKELAERSSRIALNVHLNAPVIFLPQSSSSSNVIVADLGFLSVKNRFAKQPFKSVVKI
PPVVDIMTVRLTNLKMYRTTYIKGGFQGEIQLLEPVNLDLEIQRNLSSNWYHSIPDIGIT
AHLKPISLILSQSDMTVVLRILSENLSEKSDAVPPPAPPSASAASSDSVSNKDSQGSSGP
ASGNTVVTAAVVETQQNIKLKTTLKLDFKFDSMMVVLYSPQENVVQLVDSRDEQLRLAEF
SLGTISTSVHMFSDGSMKASVQLTTCLLDDKRPKIKTINPRMMGLRPGAEQNMMVEVHYR
QGRDGINLETLVQDVYLCASMEFLLTVADVFLKATQQGFAQAPQTKTTAGAAEKKNINSS
VTYKEPSVTSKTEISLIIRNPEVVFVADLSRANAPALVLSTQCELLMKSCAEGSQITAVI
NDLKIMACPFLSEKRKNNMTTVLQPCQVFFQSAQTPTSPQAMEVSMNALTLKVSPLIINT
VITILSVLSPAAETPEELDSPVAINLWEKRSWKDLKFWFLEEDRDEDTKSVVPLVPKGES
LQMNIKSICLTLEAGVGHRTIPMLLAKSSFYGDVKNWSTLINLHSKLDLEVHYYNEVMGV
WEPLLEPLEDETGEAFRPWRLILKMKKKPLSCSELSDEVDYQVPDYKTVIVISSKDQLNI
TLSKCGLTMLSNLGQAFAEAAKQTADSFQKEAAPFVVQNHLNLPVSVRYSEMFSPIHHRS
TNFTVDLKDRETLDIDYSTKRDSDQFSAIISLSGKDYYIQPTPAGHTSASVIPLIKVGRG
MYSVVHLDSGVTCFLVCQISSVEGSKYIKIRSPFQIINHFQIPFKVFEDLTCLGNALPNE
EFCVPLNSYRSELSLQPVLEDSDQNEQFECSEGFSYEDVSIEQPEKRLRQTCRRRGDQGG
VLIVNMVPVKDAVTFKHTGDAGENFDVPFVLHLWPSILLRNLLPYPISYKLKDGGGSAPE
ATLNPGHSAQLYTAVINQSSVDLCLLNYLAQDWSSEYSFLSDQEEITFIVFQSVRDPNEH
DEGPEMKRAELDIAVHVKYELGEMVVAIHSPYWMVNKTSRLLQYKADDIHRKHALDYDMP
LLFSFKPRYFLQNNKVRLMISDSELSDDFSLDTVGSHGHVKCKGRHKDYMVGVKIEASSF
TLTRIVTFVPFYTLVNKTKKSVFICEDGLDNWTEAKPEEVTVPFWPENDTKRLKIKVENC
TLPPCTIDFTRQENCLLLRMDNSCGGIIVDVNLSEHSTTIRFSEYHDGAAPFLLINHTKE
QTLKLYQSSQKQEEQEELEPGKAVYYTWAESTGSRELCWKCGTYSGKLKSEEDVCIDVNN
EKKLFVLSFYEGLQRVVLFTEDQHTYKLLCESERVQLAEQEIVLSLQNMGVSLVNNNSSQ
EVSFIGITSSDVVWELKPKKKNRWKTLSAKETDILENSYRQYMETEPTNSEIFNMDNGVQ
VSFTPNGVDMRMLQPCSAPLRRHFLPAVKVEYSVSTRQSSYRIQIHRIQIQNQLSGAIFP
YVFYPVKLPKSITMDSEPKPLTDISIVTRTAGHSNISRIKYFKVLIQEMNLKMDLGFLYA
ILDLFSPENASIMSSEQEVELFETDLENIKTELNSVSAADNSPISLFEYFHISPIKLHLS
FSLSTGGEDSMKQERETEVIPVQSLNLLLKSIGATLTDVQDVVFKLAFFQLNFQFCTTQQ
LQWEVVRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGFEAFFYEPYQGAIQGPEEFV
EGMTIGVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEEYQQKRREAMNKQPSGLKEG
LARGGKGLVSGFVSGITGIVTKPIKDSEGAAGFFKGFGKGLVGAVARPTGGIIDMASSTF
QGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGLGSQMLQKIENGRYAKYRYFAHAK
VNESDILMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKDPMIVDNRRLRIEAKERVKSVF
HAKEFGKIINFRTPEIAKWVLAKLDDARENLP
NT seq
8916 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgaaagcttggtagtcgatgtcctcaaccggtttttaggagactacgttgtc
aaccttgatagctctcagttaaagctcggcatctggggaggtgatgcagttctcactaat
cttgagataaatgaaaatgctttgagtcagcttgacattccttttaaagtaaaagctggt
catataggacggctagagctaaagatcccatggaagaacctctacacacaatcagttgag
gcaacattggatggtgtctatctcctcatagtccctttagcaagcataaagtatgatgca
gaaaaagaggagaaacaacttcaagaggctcgtcagcgaaaactacagcagatagagaca
aaactgactgctggtgaccaagagaattctactttggaaaagcaggacacctttgtggaa
aagcttgtcactcagatcatcaaaaacctgcaggtccaaatatctaacatccacgtgcgt
tacgaagacaatgtcactaatccagactcccctttgtctattggagtgtcacttaaaaac
ctcagtcttcagcttgttcgtcttgacaacttatttgcctatttgaacgtcaactctgtc
ctcttttctaactatggcacagaggaggctttgctttccctccagagcagtatggaagtg
tataattctgattccagcaaccatgacttcagtgagtgtcaccccatcacatttctgcac
atcaaaagcagtacacaatctaaagtcctctcttttggcatacattgggagttttatggt
ataaatttaacaaaagttttaatctgtgctctagtttttcgtcccatctcggtggatgct
aaattgcagatgaatcccaggtcagatgtggacttctcccgtcccaaaacagacctcaca
gtcaatctcagtgaggtggccattgaactcaacagattgcaatacgtaagcattctggag
ctgttggggtcagtgtacatgatgtcacgcaatctgccatacaggaagtacagacccata
gtccaagttcacaggaatgcccccatatggtggaattatgcaatcacgagtgttcttgag
gtcgatgtgaagcctcgattacacatgtggtcatggcagcacattcgctgccatcggcaa
atggtgaagttttacaaagatttgtacaagaccaaaatcaccagcaagaaaccaactgag
gagttacttaaggcactacaggagccggaaaagacattggatatttttaacatcactctt
gctcggcagcaggccgaagtggaggcaagcaaggcgggtttgtgtatttaccgtccaggc
atgaagatggaggaagagcagtctcaggggtggctcagctggatgtggaactggggcgga
gaggctgaaaaaccaaaagaggtcaagactggaggttttgatgagcttttaacacctgct
gagaaggccaaactgtacactgccattggatacagtgagaccgatgtcaatcacaacctg
ccaaagaatattacagtgaacaccatgtcggagttctttaagccccccggtgatgtgcag
ctggatgagctcaccaatgcaacccttatgaaactggagcagtttcgagatcgtacagct
actggtcagtttcttgtccttattaaaacactggttatgacagttcaacgttcacattcc
tctgttagctgctatctcttccacccagctgaactatctaaaatcatgtccagagcatac
gacagctttgaggtacagctcagcaacctgcagcttctgtacagcaaaccagaggaagat
ttgttttacgatgctcccagctcccccatcggtgatcaacccttctttcctgataatccg
ttgccactacgctatgcagacttgcacaaaagaagtcttgtcaaagaagacgttccaaag
aacatgactgactttatcatgacatttgtgataaacatgttttctgttcagttgtgccgc
ctgtcaggagatcaggagatcacggtgctgcacttggacgtagagaatttgggaacggag
ctgaaaataaacacttttgacatgacatcaaacacatatctgcgagagatctgcctcaag
tgtcctgaatacatggattctgaaaacaagccagttcagttactcactacgttggacaac
tcagaggtcgacctaattgtcaacacacccttcacgccttttcaacatgtgccagttgtt
aagattgcaatgttgaattttttacaggttaccttctcatccctggatgttcatctacac
accgaggctctactcaatgccatgaacttcctgaacaatctccttcctccttctactaag
aaggagggtggacaggaggagctccccaccattcccgaggaggatgagaccgaaaaggaa
gaggaaaagatgatggaacctgttgttaccaagaaaaaatatgtggtaaacctgcatatc
agagcagatctccgatgtctaaaggttttcattagaggccagaaagcaaggatttctgaa
atcattattgaaggtctagtttcacaagtgctgatgaagaagaaggagatggaggtacag
gcaaacttaaagagcattgtcatcttagactgtaaccaagatgcattctacaagaaggct
gtgtccatagcagataaagaggtgtttgcctttcaaatggtaaattatacaaatgcaaca
gaaggagatgcctatttggacatgtctaaggttgacactgctgtcacactgaatgtggga
tgcatccaggtcatcttcctcaacaaatttgtctccaccattttggcttttattaataac
ttccaggaggctaaagatgctttgatggaggtgacagcccaagctgctgaaaaggcagcc
actggtgtaaaggagctggcagagaggagcagtcggattgctttaaatgttcaccttaat
gctcctgttatcttcctgccgcagtcctcttcttcttccaatgtcatcgtagctgatctt
ggttttctctctgtcaagaaccgttttgccaagcagccctttaaaagtgttgttaagatt
cctcctgttgtggatataatgactgtaagactgacaaacctcaagatgtacagaaccaca
tatataaaagggggttttcagggagagatacagttgctggagcctgtcaatctggacttg
gaaatccaaagaaatctttcctccaactggtaccatagcatacctgacatcggaatcact
gctcatcttaaaccaattagtctgattctgagtcagtctgacatgacagtggtgctgcga
attttgagtgagaatctgtcagaaaagtcagatgctgttccacctccagctcctccatca
gcctctgcagcttcttctgattcagtgtcaaacaaagactcacaaggctcgtctggacca
gccagtggtaacacagtggtgacagccgctgtggtggagacccagcaaaacatcaagttg
aagaccacactcaaattggacttcaaatttgactcaatgatggtggttttgtatagccct
caagagaatgtggtacagctggtggattcccgtgatgagcagcttaggctagcagagttt
agtcttgggacaatctctacctctgttcacatgttctctgatggctccatgaaagcctcc
gtccagctgactacctgccttctagatgacaagaggcccaagattaagacgataaaccca
aggatgatgggcttgaggcctggtgcagaacagaatatgatggtggaggtgcactaccgt
cagggccgcgatggcattaatttggaaacactggtccaagatgtctatctctgtgccagc
atggagttcctgctcacagttgcagatgtttttcttaaagctacccaacagggtttcgct
caagcgccacaaacaaagaccactgctggagcagctgagaaaaaaaacatcaactcctct
gtcacatataaagagccaagtgtgacgtcaaagacagagatcagtctcataatccgtaac
ccggaagttgtttttgtggctgacttgtcacgcgcaaacgccccagcactggtcttgtct
acgcaatgtgaattattaatgaaaagttgtgcagaggggtcgcagataactgctgttatc
aacgatctaaagattatggcatgtcccttcttatcagagaagaggaaaaataatatgacc
accgtgctgcagccatgtcaggtgtttttccagagtgcacaaactccaacatctcctcag
gctatggaggtctccatgaatgccctcacattaaaggtatctcccctcatcatcaacacg
gtgatcaccattctgtcagtactgagccctgccgcagagaccccagaggaacttgatagc
cctgttgccataaatctgtgggaaaaacgaagttggaaggacctaaaattctggtttctg
gaagaggacagagatgaagacacaaaatcagtggtcccactggtgcctaagggagagtca
ttgcagatgaatatcaaatctatctgtctgactctggaagctggagtgggacatcgcacc
atccccatgcttcttgccaagtcatccttttacggagatgtaaaaaactggtccacatta
attaatttacatagcaagcttgacctggaggttcactattacaatgaggtcatgggggtg
tgggaaccattgctggagccactggaggatgagacaggggaggctttcaggccatggagg
ctgatattaaagatgaaaaagaagccactgagttgttcagaactgtctgatgaggtggat
taccaagtcccagactataaaacagtcattgtcatcagcagtaaagaccagctcaacatc
acactctccaagtgtggactgaccatgctgagtaatctaggccaggcatttgctgaagct
gccaaacagacagcagactccttccagaaggaagcggctccttttgtagtccaaaaccat
ctgaaccttccagtctctgtccgctacagtgaaatgttttctcccatccaccaccggagc
accaatttcacagtggatctaaaggatagggaaacacttgacatagactattccaccaaa
agagactcggatcagttctcagcaattatctcattatcgggaaaggactactacatccag
ccaactccagcgggacacacctcagccagtgtgatccccctgatcaaggtgggcagggga
atgtacagtgtcgtgcacctagactcaggagtcacctgtttcctggtctgtcagatttcc
tctgtggagggcagcaagtacatcaagatccgctcacccttccagatcatcaatcatttc
caaattccttttaaagtttttgaagacttgacatgtctgggtaacgctctccctaatgaa
gagttctgtgttccactgaattcatataggtctgaactgagtctgcagccagtcctagaa
gacagtgatcagaatgagcagtttgagtgctcagagggcttcagttatgaagacgtcagc
attgagcagcctgaaaaacgcctcaggcagacctgccgtcgccgcggtgaccaggggggt
gtgcttatagtcaacatggtgcctgtaaaggatgctgtcacattcaaacatacaggagat
gctggagagaactttgatgtaccttttgtgctccacttgtggccttccatcctgttacgg
aacctccttccataccctatctcctacaaactaaaggacggtggaggctctgcacctgaa
gccactctgaacccagggcactctgctcagctctacactgcagtcatcaaccagtccagt
gttgatctttgtcttttgaactacttagctcaggactggtcatcagagtacagtttcctc
agcgaccaagaagaaattaccttcatagtgttccagtctgtacgagatcctaatgagcat
gatgaaggcccagagatgaagagagctgagctggacatagctgtacacgtcaaatatgaa
ctgggagaaatggtggttgctattcactcgccttactggatggtgaacaagacaagcagg
ctgctgcagtacaaagctgatgatattcaccgcaaacacgcactggactatgacatgccc
cttctcttctccttcaagccccgatacttcctgcaaaacaacaaggttcgtctcatgatc
tcagacagcgaactgtctgacgatttttctctggatacagttgggagtcacggacatgtc
aaatgtaaaggccgacacaaagattacatggttggagtgaagattgaagctagcagtttc
accttgacccgcattgtcacctttgtgccattttacacgctggtcaacaaaaccaagaaa
agtgttttcatatgtgaagatgggttggacaactggaccgaggctaaaccagaggaggtc
accgttccgttttggcctgagaacgacaccaaacggctaaagatcaaagtggaaaattgc
acactgccaccctgcacaatcgattttacaagacaagaaaactgtctgttgctccgtatg
gacaattcttgtggtgggattattgttgacgtgaacctgtcagaacactcaaccacaatt
cgattctctgagtaccatgacggtgcggctcctttcctccttatcaaccacaccaaagaa
cagactctgaagttgtatcagagttctcagaagcaggaagaacaggaggagctggagcct
gggaaagctgtgtattacacctgggctgaatccactgggtccagagagctttgttggaag
tgtgggacatacagtggaaagctcaagagcgaggaggacgtgtgtatagatgtcaacaat
gagaagaagctgtttgtgctctccttctatgaaggtctccagcgtgttgtgctgttcacg
gaggaccaacacacctacaaactgctctgtgagagtgagagggtgcagctggctgagcag
gaaatagtcctgtccctacagaatatgggcgtgtctctggtcaacaacaacagcagccag
gaggtctcctttattgggattacaagctctgatgtggtgtgggaactaaagccgaagaag
aaaaaccgttggaagacactgagcgccaaagaaacggacatactggagaacagctacaga
cagtacatggagactgaacccacaaacagcgaaattttcaacatggacaatggcgtccag
gtgtctttcacccctaacggtgtggatatgcgaatgctgcagccgtgcagcgctcccctc
aggaggcacttcctccctgcagtgaaggtagaatacagcgtgtcaacgcgacagagcagc
taccgtatccaaatccaccgcattcagatccagaaccagctctctggagccatcttcccc
tatgtgttctaccctgtcaagctacctaaatctatcaccatggactcagaacccaagccc
ctaactgacatcagcattgttaccagaacagcaggacactccaacatctctcgtatcaaa
tatttcaaggtgctgattcaagagatgaacctgaagatggatcttggtttcctctatgcc
atactggacctgttctcaccagagaacgccagcatcatgagctctgaacaggaggtggag
ctgtttgagacggacctggaaaacataaagacagaactaaacagcgtctctgccgctgac
aactcccccatcagcctctttgagtattttcacatttcccctatcaagctgcacctgagt
ttctctctgagcaccggaggagaggacagtatgaagcaggagagagaaactgaggtcatt
cctgtgcagtcgctcaacctgctcctgaagagcattggtgctacacttacagatgtgcag
gacgttgtcttcaagttggccttttttcagctgaacttccagttttgcaccactcagcag
ctacagtgggaggtcgtcaggcattattccaagcaggctattaagcagatgtacgtgctg
gtgcttggcctggacgtacttggaaatccttttggcctgatcagaggactgtcagaagga
tttgaagccttcttctatgagccatatcagggcgccatccagggacccgaggagtttgtt
gaaggaatgacaattggagtgaaagctctggtgggaggagctgtggggggtatagcgggt
gcagcctcccgaatcacaggcgccatggctaagggtgtagccgccataacgatggacgaa
gaataccagcaaaagagaagggaggctatgaacaagcagcccagtggcctcaaggaaggg
ctggccaggggtggaaagggactggtgtctggcttcgtcagtgggatcacggggatcgtt
accaaaccaatcaaagatagtgagggcgccgctgggtttttcaagggttttggaaaaggg
ctggtgggcgcagtagccagacccaccggaggcatcattgacatggccagcagtacgttc
cagggaatcaagagggcagctgagacgtcacaagacgtcgagtccctgcggccgccgcgc
ttcatccacgaggacggtgtcatacggccgtataaggagagggagggcctcggcagtcag
atgctccagaaaatcgagaacggacgttacgccaagtacagatattttgctcacgcgaag
gtcaatgaatccgacatcctgatgatcaccaagcggggaatctttttcgtgaccaaaggt
acgtttggccagctcacctgtgagtggcagtacctgtttgaagagttcaccaaggatccg
atgatcgtggataaccgcagacttcgcattgaagccaaagagagagtgaagtctgtcttc
catgcaaaggagtttgggaagatcatcaacttccgaactcctgagatagccaagtgggtt
ctcgccaaactggacgacgcaagagagaatctgccc
DBGET
integrated database retrieval system
