Tetraodon nigroviridis (spotted green pufferfish): GSTEN00029719G001
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Entry
GSTEN00029719G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00029719G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tng03000
]
GSTEN00029719G001
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00029719G001
04121 Ubiquitin system [BR:
tng04121
]
GSTEN00029719G001
Enzymes [BR:
tng01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
GSTEN00029719G001
Transcription factors [BR:
tng03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
GSTEN00029719G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00029719G001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTEN00029719G001
Ubiquitin system [BR:
tng04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
GSTEN00029719G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Med7
WWE_2
DZR_2
RDD1
zf-C3HC4
zf-UDP
Torus
Rtf2
Motif
Other DBs
NCBI-ProteinID:
CAG08675
UniProt:
Q4RSF7
LinkDB
All DBs
Position
13
AA seq
652 aa
AA seq
DB search
MSHSPDMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEDIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGTEKTKNKTNSTQRYFLVCSLTVWTSCILSLSLCLSLCQIPPS
DSPSPPPGLTKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLPPFP
TSPRSSSDWPMTPEPQSLFTSETIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVTRKA
LADLIEKELSVQDQSPTSPGPFSQGGGLPPPPNPSASHHFPSSLPRLPQLHHRPVYNSFS
FPSGQNSQASQQQAATRHPWMGVPTRNNLAHLNHSAGAVSHSNFLDLNLPPQHNTGLGGI
PISGIPAAAGNSLDSLQDDNPPHWLKSLQALTEMDGPAGSAVPTPQPLHTGLLDAHLPLH
HRAAGGWAPYLPPPTANPASQFHSPPPGFQTAFRPPGQPSTELLQSAAVDRH
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgacatgaaggacgaccccatggagtgccccctgtgcatggaaccg
ctggagatcgacgatgtcaacttcttcccgtgcacctgtggctatcagatctgccgcttc
tgttggcaccgcatccgcacagatgaaaacgggctgtgtcctgcgtgtagaaagccatac
ccagaagaccctgcggtgtataagcctctctcacaggaggatatccagaggataaagaac
gaaaagaagcagaagcagaacgagaagaagcagaaagtgacagaaaaccgcaagcatctg
gccagcgtcagagtggtccagagaaacctggtgtttgtggtggggctctcgcagcgtctc
gctgacccggaagtcctaaagcgaccagagtattttgggagatttgggaaaatccataaa
gtggtcatcaacaatagcacatcttatgctggttcacaggggcccagtgctagtgcttat
gtcacttatattcgctctgaagatgctctaagagcaatacagtgcgtgaacaatgtggtc
gttgatggcagaacactaaaggcttctttaggtacaacaaagtactgcagttatttcctt
aaaagtatgcagtgtcccaaacctgattgtatgtatctacacgagctgggagacgaggct
gctagctttactaaagaggagatgcaggcgggaaaacatcaagaatatgagcagaagctt
cttcaagacctctataaaattaaccctagctttctacaacctccggcatgtggaacagag
aagacgaaaaataaaaccaactccacacaaaggtacttccttgtttgctctttaactgtt
tggactagttgcatcctctcactgtctctgtgtctctctctctgccagatacctcccagt
gactccccctctcctcctcctggtttgaccaagcccagcctggtggtgcccatcagcgtc
tcagacctcacggctcgttcgcccttcgagggggcggcggccgagtcccagtctctcttt
tcagacaacagtaacttcaggcatcctaaccccctccctgcagggctgcctcccttcccc
acctccccccgcagcagctccgactggcccatgactcctgaaccgcagagccttttcact
tccgagacgataccagtgtcctcgtccacagactggcaggcggcgttcggcttcggctca
tccagcaaacagcaggatgacgacctgggcttcgaccctttcgacgtcactcgcaaggcc
ttggctgacctgatcgagaaggagctgtctgtgcaggaccagagccccacctccccggga
cccttcagccaggggggcggcctgcctcctcctcccaaccccagcgcctcccatcacttc
cccagcagcctaccacgcctcccccagctccaccacagaccggtctacaactccttcagt
ttccccagcggtcagaacagccaggccagtcagcagcaggcagccaccagacacccctgg
atgggcgtcccgacaagaaacaacctcgcacacttgaaccactcagccggtgccgtctcg
cacagtaacttcctggaccttaacctgccccctcaacacaacacaggactgggagggatc
cccatttcaggcatcccagccgcagcgggcaacagtttggactctcttcaggatgacaac
cccccacactggctcaaatccctgcaggcgctcacagagatggacggccctgccggctca
gcggtgcccacgccccagcccctccacaccggcctcctggacgcccacctccccctccat
cacagagccgcgggcggctgggcaccctacctgcccccccccacagccaaccccgccagc
cagttccactcccctccccccggcttccagaccgccttcagaccccctggacagcccagc
acagagctgctacagagtgctgctgtggaccgccactga
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