Tetraodon nigroviridis (spotted green pufferfish): GSTEN00030222G001
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Entry
GSTEN00030222G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00030222G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00030222G001
03036 Chromosome and associated proteins [BR:
tng03036
]
GSTEN00030222G001
Enzymes [BR:
tng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSTEN00030222G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
GSTEN00030222G001
mRNA degradation factors
5'-3' decay
Decapping complex
GSTEN00030222G001
Chromosome and associated proteins [BR:
tng03036
]
Eukaryotic type
Gene silencing
piRNA pathway
GSTEN00030222G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-ProteinID:
CAG09056
UniProt:
Q4RRC6
LinkDB
All DBs
Position
16
AA seq
482 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQLRGSVKPAGAPGGGGGGPQQLQINQMKGAINNGNSQPAPT
TNAVIKPGDDWKKNLKLPPKDLRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQALVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVSQVQ
MIVLDEADKLLSQDFVGMMEEILGFLSKQRQILLYSATFPLSVQKFMTSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEV
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgccaggacagagaacccagtgattttgggcttgtccaaccagaatggacag
ctcagaggctcagtgaagcctgctggagcaccaggtgggggggggggaggtcctcaacag
cttcagatcaaccagatgaagggcgccatcaataatggcaactcccagccagccccaaca
acaaatgctgttatcaagcctggtgatgactggaagaaaaatttgaaattgccccctaaa
gacttgaggatgaaaacttcggatgtgactgcaacaaaaggcaacgagtttgaggattat
tgcctaaagagggagctgctcatgggaatctttgagatgggctgggaaaagccatctcca
attcaggaggaaagtattcccattgcactatctggaagggacatcttggccagagccaag
aacggcacagggaagagtggagcctacctcattcccttacttgaacgcattgacctgaaa
agagactgcatacaagctttggtcatcgtgcccaccagagaactggctctgcaagtgagc
caaatctgcatccaggtcagcaaacacatgggcggcgtgaaggtgatggcaaccacaggt
ggaaccaacctccgcgatgacatcatgagactggatgagacggttcatgtggtcatcgcc
accccagggaggattcttgacctgatcaagaagggcgtggccaaagtcagccaagtgcag
atgatcgttctggatgaggctgacaaactgctgtctcaggactttgtgggtatgatggaa
gaaattctgggtttcctgtccaaacagaggcaaattttgctctattctgccacctttccc
ctcagcgtgcagaagtttatgacttcccatttgcagaaaccttatgagatcaacctgatg
gaggagctgacgctgaaaggtgtcactcagtattacgcttatgtcactgaaaggcagaag
gtccattgcctcaacaccttgttctcccggctccagatcaaccagtccataatcttctgc
aactcctctcaaagagtggaactcctcgcaaagaagatctcccagctgggatattcatgc
ttctacattcatgccaagatgagacaggagcatcgtaaccgcgtgttccatgacttcaga
aatggcctctgcaggaacctggtctgcactgaccttttcacaagaggaatcgatatccag
gctgtgaatgttgttatcaactttgatttccccaaactgggagaaacgtaccttcatcgt
attggaagatctgggcgcttcggacacctgggcctcgccatcaacctcatcacctacgat
gaccgcttcaacctgaaagggatcgaggagcagctgggaaccgagatcaaacccatcccg
ggcatcatcgacaagagcctgtatgtggccgaatatcacagcgagagcggcgaagaagtc
aagccatga
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integrated database retrieval system
