Tetraodon nigroviridis (spotted green pufferfish): GSTEN00031292G001
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Entry
GSTEN00031292G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14407
cleavage stimulation factor subunit 2
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTEN00031292G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00031292G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
GSTEN00031292G001
U7-dependent histone pre-mRNA processing factors
GSTEN00031292G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
RRM_7
RRM_10
RRM_Rrp7
Motif
Other DBs
NCBI-ProteinID:
CAG09844
UniProt:
Q4RP38
LinkDB
All DBs
Position
1
AA seq
570 aa
AA seq
DB search
MASASVAAAAAAAAANRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYD
RETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGSPI
IESPYGDSVQPQEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAY
ALLQAQVVMRIVDPEIALKMLHRQSSVQPLISSGPAGGPASINAPATQPSVPPSQPQPVP
GMHINGAPQMMQSANMGVVPGAMPVQGPGQGPVPVGQGPVPVGPAGNLQHSPTGASGQAA
IERPQGPGGIPPRGLLGDGPNDPRGGTLLSVTGEVIDPNRAYMGAPQQHQGPVHMSQMAG
GPPPDMRGPPLDMRGPPMADQRNMMGDPRGPIMMEPRGPPMETRGRDPRAMDTRGPVTAQ
RVPMAAGMPGAVPHGMGPNAPPSARPVKQRQQMILSAVPRSRDAFGSAVRRRLQSGPEPG
FITGSGEGRSDHAGPAADPGADRHVASRAAAEHPHPQRADSKDRRRTMMLPALSDRFQDS
AVTFCPERSEGASYERRISLCLHIATALFV
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgcgtctgtcgccgctgctgctgcggctgctgctgctaacagagacccagcc
gttgatcgttctctgagatcagtctttgttgggaatattccttatgaagccacagaggaa
caactgaaagacatcttttccgaggtcggacttgttgtcagcttcaggttagtgtatgac
agagagacaggaaagccaaaaggatatggcttttgtgaatatcaagaccaggagacggcc
cttagtgctatgcggaacctaaatggaagagaatttagtggtcgggcccttcgtgttgat
aacgcggcaagtgagaaaaacaaagaagaactgaaaagtttgggaactggaagccccata
atagagtctccttatggcgatagtgttcagccacaggaagccccagagtccatcagcaga
gctgtggccagtttgccacctgagcagatgtttgaacttatgaaacagatgaagctctgt
gtgcagaacagcccccaagaggcaagaaacatgctgctgcagaaccctcagctggcttat
gctctgttgcaggcccaggtggtcatgcgcatcgtggacccagagatcgccttgaaaatg
ctccatcgtcaatcttcagtccagcctctgatttccagtgggccagctggaggacctgca
tctatcaatgctccagccacacagccgagtgtgcctccgtcacagccacagcctgtacct
ggaatgcacatcaatggagctcctcaaatgatgcagtcagcaaacatgggtgttgtccct
ggagcgatgcctgtacaaggaccaggtcaaggaccggtgccagtaggacaaggaccagta
ccagtaggaccagcaggaaaccttcagcattctcccacaggagcgtcggggcaagctgct
atcgagcggcctcaaggacctggaggcatcccccctagaggccttctgggtgatggtcca
aatgatccccggggaggaactctgctgtcagttactggagaggtcatagacccaaaccgc
gcttacatgggggccccacagcagcaccagggacctgtacatatgtcccaaatggcaggg
ggacccccacccgatatgagaggaccgccactggacatgagaggcccacccatggctgat
cagcgcaacatgatgggcgatcccagaggtcccatcatgatggaaccacgaggacccccg
atggaaacccgaggtcgcgacccaagggcaatggatactcgaggtccagtgacggctcaa
agggttcctatggctgcaggaatgccgggtgccgttcctcacggcatgggccctaatgcc
cctccttctgcaagaccggtaaaacaacgacagcagatgattctgtcggctgttccccgg
tccagggatgccttcggttccgccgtcaggaggaggcttcagtccgggccagagccaggt
ttcatcacaggatcaggagaaggccgctctgatcatgcaggtcctgcagctgaccccgga
gcagatcgccatgttgcctccagagcagcggcagagcatcctcatcctcaaagagcagat
tcaaaagaccgcaggcgcaccatgatgcttccagctctgtcagaccggttccaggactct
gccgtcactttctgccctgaaagatctgaaggtgcctcttacgagcggaggattagtttg
tgtcttcatattgctaccgccctctttgtctga
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