Tetraodon nigroviridis (spotted green pufferfish): GSTEN00032180G001
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Entry
GSTEN00032180G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTEN00032180G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tng03021
]
GSTEN00032180G001
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00032180G001
Transcription machinery [BR:
tng03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GSTEN00032180G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
GSTEN00032180G001
U7-dependent histone pre-mRNA processing factors
GSTEN00032180G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF1611
Beta_lactamase3
Motif
Other DBs
NCBI-ProteinID:
CAG10507
UniProt:
Q4RM75
LinkDB
All DBs
Position
10
AA seq
730 aa
AA seq
DB search
VPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE
IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADEMLY
AETDLEESMDKIETINFHEVREVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ
EDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFAL
GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININNPF
VFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTL
AKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNE
MARLKAALIREYEDNEQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADNRCVQGQRVSG
ILVKKNFNYHILNPSDLSSESSFGVRTLWSGKRESCRACFTAYTELAMSTVKQSQAIPFT
GPYSLLVCHLRNLTGDVEELDGTEKNTLKVFKTVTLTHQVGMVLLEWIANPLNDMYADAI
ATVVLEVQSNPKALKVMETQNAIMDVTVFQARLGLMLQEMFGEECVDFTDHKNVSVAVDG
KTIHVSLDTRVTTRAGGWCCLLRGRRRHRGRLPERDGGNGGAEALRRSQPCHLTPGPGRG
ASSDPHTAHL
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtacccgcagaggaaagcgaccagcttctgattcgtcctttgggtgctggtcaggaggtt
gggaggtcatgcatcatcctggagttcaaagggaggaaaattatgctggactgtggcatc
caccctggcttggaggggatggacgctctcccctacatagacttgattgacccggccgag
attgacttgctgctcatcagccacttccacctggatcactgtggagctctgccctggttc
ctccagaagaccagtttcaaaggcagaaccttcatgacccacgccacgaaggccatctac
cgctggctcctgtcagactacgtcaaagtcagcaatatttctgctgatgaaatgctgtat
gctgagactgacctggaggagagtatggataagatagagaccattaacttccatgaggtc
agggaagtggccgggatcaagttctggtgttatcatgccggccatgtgctgggagccgcc
atgttcatgattgaaatcgccggagtcaagctgctctacacgggagacttctcccggcag
gaagacagacacctgatggcggccgagatccccagtgtcaaaccggacattttaatcata
gagtccacctacggcacccatatccacgagaagagggaggagcgggaggctcgcttctgc
aacacggtccatgacatcgtcaacagggaaggtcgctgtctgatccccgtgttcgcgctg
ggccgggcccaggaactgctgctcatcctggatgagtactggcagaaccacccggagctg
cacgacattcccatctactacgcctcatccctggccaagaaatgcatggctgtgtaccag
acctacgtcaacgccatgaacgacaagatacgcaaggccatcaacatcaacaaccctttc
gtcttcaagcacatcagcaatctcaagagcatggatcactttgacgacatcgggcccagc
gtggtgatggcgtctcctggcatgatgcagagcggcctgtccagggagctctttgagagc
tggtgcaccgacaagaggaacggcgtgatcatcgccggctactgcgtggagggaacgctg
gcgaagcacatcatgtccgaaccggaggagattaccaccatgtcgggccagaagctgcag
ctgaaaatgtcggtggactacatctcgttctcggcccacacggactaccagcagaccagc
gagttcatcagggctctcaagcccccccacgtgatcctggtccacggggagcagaacgag
atggcccgcctgaaagccgctctcatcagggagtacgaggacaacgagcaggttcacatc
gaggtccacaaccctcgcaacacggaagccgtcactctcaacttccgaggggagaaactg
gccaaggtgatgggctccctggctgacaacaggtgtgtccagggccagagggtgtcgggc
attctggtgaagaagaacttcaactaccacatcctcaacccctccgacctctccagtgag
tcttctttcggtgtgcggacgctctggagtggaaagcgtgaaagctgccgtgcttgtttc
acagcgtacaccgaacttgccatgagcacggtgaagcagtcccaggccatccccttcacc
gggccgtactcgctgctggtgtgccacctgaggaacctcaccggcgacgtggaggagttg
gatggaacggagaagaacaccttgaaggtctttaaaaccgtcactctgacccaccaggtc
ggcatggtgctgctcgagtggatcgcgaaccctctcaacgacatgtacgcagacgccatc
gccaccgtggtgctggaggtccagtcaaaccccaaagcgctgaaagtcatggagacgcag
aatgccatcatggacgtcactgttttccaagcgcggctggggctcatgctgcaggagatg
tttggagaggagtgtgtggatttcaccgaccacaaaaacgtctcggtggcggtggacgga
aagacgattcacgtcagcctggacacaagggtgacgacccgcgctggcggctggtgctgt
ttgctacgaggacgacgaaggcacagaggacgactccctgagagagatggtggaaacggc
ggtgcagaggctctacgacgctctcaaccctgtcatctgacccccgggccgggccggggg
gcctcgagtgacccccacaccgctcatctataa
DBGET
integrated database retrieval system
