Tetraodon nigroviridis (spotted green pufferfish): GSTEN00032651G001
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Entry
GSTEN00032651G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K10570
DNA excision repair protein ERCC-8
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03420
Nucleotide excision repair
tng04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
GSTEN00032651G001
09124 Replication and repair
03420 Nucleotide excision repair
GSTEN00032651G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tng04121
]
GSTEN00032651G001
03400 DNA repair and recombination proteins [BR:
tng03400
]
GSTEN00032651G001
Ubiquitin system [BR:
tng04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
GSTEN00032651G001
DNA repair and recombination proteins [BR:
tng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
GSTEN00032651G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WDR55
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
WD_LRWD1
WD40_RFWD3
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR75_2nd
Beta-prop_IFT122_1st
MIOS_WD40
Motif
Other DBs
NCBI-ProteinID:
CAG10886
UniProt:
Q4RL46
LinkDB
All DBs
Position
12
AA seq
378 aa
AA seq
DB search
MLAFLTARGAGLDDPLRLRRAESTRRVLNLKLNHDRDVDRIHGNAINTIDIETIEGRYML
SGGADGVIVIYDLENFSGSQQYTCKAVCTVGRSSRHVHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEGNVYSHHLSPIAKKHSLIAVGTTNPKIQLCDLRSGSKIH
ILQGHRAEVLSVRWSPRYEHILATASADSKVKMWDVRRASSSLLTLDQHNGDKTKAASET
VNTAHDGRVNGLCFTGDGLYLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKKLQFTV
SRGCSPEFVFVPCGSTVAMYALHTGKLVTMLRGHYNNVDCCEFHPDYQELYTGGKDCNIL
AWVPVLRSPDMEEESNGT
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgttagcatttttgacagcaagaggggcaggtctggatgatcctttgcgactgaggcgc
gcagagtcgacgagaagggtcctcaacctgaagttgaaccatgacagagacgtggacaga
atccacggaaacgccatcaacaccatagacattgaaacaatagaaggcagatacatgctg
tccggtggagcagatggcgtgatcgtcatctatgacctggagaacttcagtgggagtcag
cagtacacatgtaaggctgtgtgtacagtaggcaggtccagtcgacatgtccacaaattc
agcgttgagacagtccagtggtatccgtacgacactggcatgtttgtatccagttctttt
gacaagacaatgaaagtttgggacacagaaacgctaaagcctgcggaggtctttgagttt
gaggggaatgtctacagccaccacttgtcaccaatcgccaagaagcacagtctcattgca
gttggcaccacaaaccctaaaatccagctgtgcgacttaagatcaggatcaaagattcat
attctacagggtcacagagcagaggtcctgtctgtgcgttggtcgcccagatacgagcac
atcttagccaccgccagtgcagacagcaaagtgaaaatgtgggatgtgcgtcgggcttcc
agtagtctcctgactttggaccagcacaatggagacaaaacaaaagctgcctctgagaca
gtgaacacggctcatgacggcagagtgaacggactgtgcttcaccggtgacggcctttac
ctcctcactactggtactgatgaccgaatgagattatggaatagtgccactggggaaaac
acactggtaaactatgggaaggtctgcaacgagagccggaaaaagctacagttcacagtg
tcacgtggctgcagcccggagttcgtgtttgtgccctgtggaagcaccgttgccatgtat
gccctccacaccggcaagctggttaccatgcttagaggccactacaacaatgttgactgt
tgtgagttccacccagactaccaggagctgtataccggagggaaagactgtaacatccta
gcatgggttcccgtccttcgaagtccagacatggaagaagaatcaaacggcact
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