Tetraodon nigroviridis (spotted green pufferfish): GSTEN00032966G001
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Entry
GSTEN00032966G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K06236
collagen type I alpha
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng04510
Focal adhesion
tng04512
ECM-receptor interaction
tng04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
GSTEN00032966G001
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
GSTEN00032966G001
09142 Cell motility
04820 Cytoskeleton in muscle cells
GSTEN00032966G001
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tng00536
]
GSTEN00032966G001
Glycosaminoglycan binding proteins [BR:
tng00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
GSTEN00032966G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-ProteinID:
CAG11117
UniProt:
Q4RKG5
LinkDB
All DBs
Position
21
AA seq
1403 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQFCFCLQGLKGPRGDRGPPGPDGKDGKPGLPGPPGPPG
PPGLGGNFAAQYDGVKAPDPGPGPMGMMGPRGPPGPPGPPGSQGHTGHPGEPGEPGQSGP
LGPRGPPGPPGKSGEDGNNGRPGKPGDRGVPGPQGARGFPGTPGLPGMKGHRGYPGLDGR
KGESGAAGPKGETGARGAAGSPGQAGARGSPGERGRAGPAGATGARGADGNVGPAGAAGP
VGNAGPPGFPGGPGPKGDVGPAGSSGPSGPQGSRGEPGPNGAVGPVGPAGNPGANGLNGA
KGAAGTPGIAGAPGFPGPRGGPGPQGPQGAVGQRGLAGDPGVQGIKGDAGGKGEPGNAGP
AGPPGPHGEEGKRGSAGEAGSSGPAGLRGARGAPGSRGMPGADGRGGPVGMPGARGATGA
AGARGIPGDAGRNGEPGPAGARGLPGSPGNSGPPGKEGPAGPSGQDGRSGPPGPTGPRGQ
PGNIGFPGPKGVAGEPGKPGDKGGTGPTGLRGPPGPDGNNGAVGAVGPAGGPGEKGEQGP
AGATGFQVWRSAWSCWSCWRGWQARREKGQATHFQRTICVPTGYPRRRWCCRTCWCQDQP
KTLNLFTSTQGEKGVPGSAGAVGAQGPIGPRGPSGAPGSDGGKGEPGSAGAAGGPGPQGP
SGMPGERGVAGAPGVKGEKGEVGHKGPDGNPGRDGARTQLFSELRGTTSIISPSSVQGLP
GNAGPPGPTGANGDKGESGAFGPSGPAGPRGASGERGEVGPAGPAGFAGPPGADGQTGAR
GERGPAGVKGESGPSGPAGPPGPSGLAGPAGVSGAAGPRGDTGPSGLTGFPGAAGRVGTP
GPAGIVGPPGPAGPAGKDGPRGPRGDAGPMGAPGDLGMAGPVGPAGEKGTSGESGPVGPP
GVPGTSGPLGFSGMIGLPGARGDRGTPGPVGSLGAPGSDGPSGPAGARGAPGNMGLPGMT
GPQGEAGREGSPGNDGPPGRPGSPGFKGDRGEPGPGGPAGVVGAPGAAGPSGAAGRPGNR
GEAGPGGSTGPVGAAGARGASGPAGPRGEKGVAGDKGERGMKGLRGHPGLQGMPGPSGAP
GDTGPAGAHGPAGPRGPAGPHGPPGKDGRAGGHGAVGGPGSRGPPGQIGPAGPPGPPGPP
GPPGASGGGYDLSGYDEYRADQPALRAKDYEVDATIKSLNTQIDNLLSLEGSRKNPARTC
RDIQLSHPEWASGFYWIDPNQGCINDAIKVFCDFTSRETCIHAHPESIAKKNWFRSTEGK
KHVWFGETINGGTEFTYNDETLSPQSMATQLAFMRLLSNQASQNITYHCKNSVAYMDAET
GNMKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIEYRTNKPSRLPVLD
IAPLDIGGAEQEFGLDIGPVCFK
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagcg
tcatgtcaattttgtttttgtctgcagggtctcaaaggacctcgaggtgacaggggtcct
cctggcccagatggaaaagacggcaaacccggactccctggtccccccggcccccctggt
ccccctggtcttggaggaaactttgctgctcagtatgatggtgtaaaagctcctgatcct
ggccctggacccatgggtatgatgggtcccagaggacctcctggacctcccggacctcct
ggatcccagggacacactggacaccccggtgagcccggagagcctggtcagagtggcccc
cttggtccccgtggcccccctggaccccctggcaaatctggagaggacggtaacaatggc
agacccggcaagcctggagacagaggtgtccctggacctcagggcgctcgtggattcccc
ggaacccccggacttccaggaatgaagggacacagaggttaccctggtctggatggccgc
aaaggagagtctggtgctgctggccccaagggtgagactggtgcccgcggagctgctgga
agtcctggacaggctggagctcgtggttcacctggtgagagaggtcgtgctggtcctgct
ggcgccactggtgctcgtggtgctgatggcaacgttggacccgccggcgctgctggtcct
gttggtaatgctggtcccccgggtttccctggtggccccggtcccaagggagatgttgga
cccgctggatcttctggcccaagcggacctcagggttcaagaggagagcctggtcccaat
ggtgctgttggccctgttggtcccgctggcaaccctggtgctaacggtctgaacggagcc
aagggagctgctggtactcctggtattgctggagctcctggtttccctggacctagagga
ggacctggaccacagggccctcagggtgctgtcggacagagaggccttgctggagatcct
ggtgttcagggtatcaagggagatgccggtggcaagggtgaacctggtaacgctggacct
gccggacctcctggaccccatggtgaggagggaaagagaggatccgctggtgaggctggt
tctagtggacccgctggtctccgtggagccagaggtgcccctggcagccgtggcatgcct
ggtgccgatggaagaggtggcccagttggtatgcctggtgcccgtggtgccaccggtgca
gctggagctcgtggaatccctggagatgctggccgtaatggcgagcctggtcctgctggt
gccaggggtcttcctggaagccctggaaattctggacccccaggaaaagagggacctgct
ggaccttctggacaagatggtcgcagtggacctcccggcccaactggacctagaggccag
cccggaaacattggcttccccggacccaaaggagttgctggtgagcctggtaagcctgga
gacaaaggaggcactggccccactggtctgagaggaccccctggacctgatggcaacaat
ggagctgttggtgctgttggacctgctggtggtcctggtgagaagggagaacagggtccc
gctggagctactggcttccaggtttggaggtcagcctggtcctgctggagctgctggaga
ggctggcaagcccggagagagaaaggacaagcaacgcacttccaacgcaccatctgtgtt
cctacagggtatcccaggagacgctggtgctgccggacctgctggtgtcaagatcagcca
aagacattaaatcttttcacgtccacacagggagaaaaaggtgtccctggttctgctgga
gctgttggagcccagggaccaatcggaccccgtggaccatctggagcccctggatctgat
ggtggcaagggagagcctggtagtgctggagctgctggtggccctggacctcagggacct
agtggtatgcctggtgagcgtggagttgctggtgcacctggagtcaagggagagaagggt
gaggttggacacaaaggacctgatggtaatcccggcagagatggcgctcgtacccaatta
ttctctgaactacgtggaacaaccagcatcatctctccttcctctgtccagggtctccct
ggaaatgctggtcctcctggacctactggagccaacggtgataagggtgagagcggtgcc
ttcggaccttctggacctgctggacctcgtggagcctcgggtgagcgtggagaggttgga
cctgctggacctgcaggatttgctggaccccctggtgctgatggtcagactggagccaga
ggcgagcgtggacctgccggagtaaagggagaatctggtccctctggacctgctggaccc
cctggaccttctggacttgctggtcctgctggtgtttctggagctgctggtcctcgtgga
gacactggtccttctggtctgactggtttccctggtgctgctggcagagtcggtactccc
ggtcctgctggtattgttggaccccctggacctgctggtcccgctggtaaagatggccct
cgtggaccccgtggagatgctggccccatgggtgcccctggagaccttggtatggctgga
ccagttggcccggctggagagaagggaaccagtggagagtctggtcctgttggtcctcct
ggtgttcctggaaccagtggtcctctgggattctcgggaatgattggtctgcctggtgcc
agaggagaccgtggtacccctggtcctgttggttctttgggagctcctggcagtgatgga
ccttctggtcccgctggagctcgtggagcccccggaaacatgggtctgccaggtatgact
ggaccccagggagaggctggccgtgagggtagccccggtaacgatggacctcctggtcgc
cctggatctcctggattcaagggagaccgtggtgaacccggacctggtggacccgctgga
gtcgttggtgcccctggtgccgccggaccctctggtgctgctggtagacctggaaaccgt
ggagaggctggcccaggaggttccaccggacctgtcggagctgctggagccagaggcgcc
tctggccctgctggaccccgtggagagaagggagttgctggagacaagggagagagaggc
atgaagggactgcgtggacatcctggtctccagggaatgcccggaccatctggagctcct
ggtgacactggacctgctggagcacatggacctgctggacccagagggcctgctggaccc
cacggaccccctggtaaggacggtagagctggtggccacggtgctgttggtggtcctggt
tctcgtggaccccctggacaaatcggacctgctggtcctcccggtcctcctggtccccct
ggacctcctggtgcttccggtggcggatacgacctgtctggatacgatgagtacagagct
gaccagcctgccctgagggccaaggactacgaggtggacgccaccatcaagtccctcaac
actcagatcgacaacctgctctcccttgagggatccaggaagaaccccgcccgcacctgc
cgtgacatccagctcagccaccctgagtgggccagcggcttctactggattgaccccaac
cagggctgcatcaacgacgccatcaaggtcttctgcgacttcaccagccgtgagacctgc
atccatgcccaccccgagagcatcgccaagaagaactggttcagaagcaccgagggcaag
aagcacgtctggttcggagagaccatcaacggtggcaccgagtttacctacaacgatgag
acgctcagcccacagagcatggccacccagctggccttcatgcgcctgctgtccaaccag
gctagccagaacatcacctaccactgcaagaacagcgttgcatacatggatgctgagact
ggcaacatgaagaaggctgtggtgctccagggctccaacgacgtggagctgagggctgag
ggcaacagccgctttaccttctctgtgctggaggatggctgcactagacacactggtgaa
tggagcaagacagtgatcgagtacagaacaaataaaccatctcgcctgcccgtcctcgac
attgcacctttggacattggtggagctgagcaggagtttggtttggacattggcccagtc
tgtttcaaa
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