Tetraodon nigroviridis (spotted green pufferfish): GSTEN00033428G001
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Entry
GSTEN00033428G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
GSTEN00033428G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tng03009
]
GSTEN00033428G001
Ribosome biogenesis [BR:
tng03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
GSTEN00033428G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Utp13
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_RIG_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_DCAF12
Ge1_WD40
Cytochrom_D1
Motif
Other DBs
NCBI-ProteinID:
CAG11456
UniProt:
Q4RJH6
LinkDB
All DBs
Position
3
AA seq
861 aa
AA seq
DB search
SYAVSSKIEPFYKGGRVQISKDENYIFCTCGSRVNVLEISTGKIVHSVEHDDQEDITCFA
LSSDDELLVTASRALLLKQWDWRQAQCTRSWRAIHTAPVASMTFDSTSTLLATGGCDGTI
KLWDVVKQYCTHNLRGSSGVIQLVQFHPDIDRLQLFSSSMDCSIRIWDLSSSQCVCVLQS
HYSAVTSLSFSLDGDTMVSSGRDKICTVWDLKQQKAKRTIPIYEAVEGAVILPENQDFSQ
IGVKKPKLHFITAGSKGILRVWDPNTARCVFSQTLTGVSAKNEKGEGDEEEKEKADNPRS
LTHLLLLPASLRLATVTAEHNIMLYQLPGLTTLQQVGTGNMWQDITPCQRVQDLFAGRFS
LAPSQFVGYSDEVLDVKFLGKDDSHIVVATNSCQLNVFELASNSCQILYGHTDTILSLDV
FRKGLLFASCGKDKLVCVWHMAGGSVRCVARGYSHTNAVGAVSCSRMKASFVVSGSLDCT
VKVWDLPADLTAAEDNIHQLTPRATEKAHDKDVNSVTVSPNDKLLASASQDRTAKLWSLA
GEGSLGLLGVCRGHRRGVWAVCFSPVDQVLATSSADGTTKLWSLQDFSCLKTFEGHDASV
LKVIFVSRGTQLLTSQSQLLSLHCVLSGSDGLVKLWTIKTNECVKTLDAHQDKVWGLHGS
RRDDKMVTGSADSNITVWEDVTEIEMAEEQAKQEEHILKQQELSNLLQEKKYLKALGLAI
SLDQPHTVLTVIKAIRQTEDNSELLEKTVLKLRVDQKEALLRFCVAWNTNAKNCQDAQVV
LQVLLTHVPPEELLQYQGARTHLEALVPYTGEPGRRGAGVPVTACAATVTLSFTERHMQR
IGRLLQASMFLNYMWQKMRVV
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
agttacgctgtttccagtaagattgaaccattttacaagggaggaagagtgcagataagc
aaggatgaaaactacatcttttgtacgtgtggatctcgcgtcaacgttttggagatcagc
actggaaagatcgtacacagtgtcgagcatgacgatcaagaagacattacatgttttgca
ctcagcagtgacgatgagctgctggtaacggctagccgagctctgctgctgaagcagtgg
gactggaggcaggctcagtgcactcgctcatggagggccattcacacggctcctgttgcc
agtatgacctttgactcaacctccaccctcctggccacaggtggctgtgatggcaccata
aagctctgggatgtggtgaagcagtactgcacccacaacctgagagggtcatctggagtc
atacaactggtccagttccacccagacattgacaggctgcagctcttctcctcctctatg
gactgcagcattcggatatgggacctgagctccagccagtgtgtgtgtgtgttgcagagc
cactacagtgcagtgacctctctcagcttcagcctagatggtgacaccatggtcagctct
ggcagagacaaaatctgcacagtgtgggatttgaagcaacagaaagctaagagaactata
ccaatctatgaggcggtggagggtgctgttattctgcctgagaaccaggatttctctcag
atcggagtcaagaagcctaagctgcatttcatcaccgctggcagcaaaggcatactgcga
gtgtgggaccccaacacagcacgttgcgtcttcagccagactctcaccggtgtctctgca
aagaatgaaaagggagaaggggatgaggaggagaaggagaaggccgacaacccccgcagt
ctgacgcatctcctcctcctgcccgcctccttgagactggctacagtcacagcggaacac
aacataatgctgtaccagctacctggccttaccaccctgcagcaggtaggaactggcaac
atgtggcaggatataactccatgtcaaagagttcaggatttatttgcaggccgtttctct
ctcgccccctcgcagtttgtcggctacagtgacgaggttctggacgtgaagttcctgggc
aaagacgacagccacatcgtcgtggccaccaacagctgtcagctgaacgtgtttgagctg
gccagcaacagctgccagatcctttatggacacacagacacgatcctctccttggatgtt
ttcagaaaaggccttctttttgcaagctgtggaaaggacaagttggtctgtgtgtggcac
atggccggtggcagtgtgcgctgtgtggcccggggctacagccacaccaatgctgtgggc
gccgtctcctgctccaggatgaaagcctcttttgtagtgtccggcagtctggactgcaca
gtgaaggtttgggatcttcctgctgacttgaccgcagcagaggataacatccaccagctg
accccccgcgccacagagaaggctcacgacaaggatgtaaacagcgtcacggtgtcgccc
aacgacaagctgctggcctcagcctcccaggaccgcaccgccaagctgtggtccctggct
ggcgagggcagcctgggcctgctgggggtgtgccggggccaccgccggggcgtctgggcc
gtctgtttctctcccgtcgaccaggtgctggcaacctcctcagcagacggcaccaccaaa
ctgtggagcctgcaggacttcagctgcctgaagacatttgaaggtcacgacgcctccgtt
ttaaaggtcatctttgttagccgaggcactcagctcctgaccagccaatcacagctcctc
tctttacactgtgtcctcagtggttctgatggtttagtgaagctgtggacaatcaagacc
aatgagtgtgtaaagacgctggacgctcatcaggataaggtgtggggtctccacggcagc
cgcagagacgataagatggtgaccggctcggccgactccaatattactgtgtgggaggat
gtgacagaaatcgagatggcagaagagcaggccaagcaggaagagcacatactcaagcag
caggaattatccaatctgctccaggaaaagaagtacctgaaggctctgggtctggccatc
tcattggaccaacctcacactgtgctgactgtcatcaaagccatccgacaaactgaggac
aacagcgagctgttagaaaagacggtgctgaagctgcgtgtggatcaaaaagaggctctc
ctgcgattctgcgtcgcgtggaacaccaacgccaaaaactgccaggacgctcaggtggtc
ctgcaggtcctgctcacacacgtgccgccagaggagctgctgcagtaccagggggcccgc
acccacctggaggccctcgtcccgtacacaggtgagccagggcgccggggcgcaggcgtt
cccgtcacagcatgcgcagctacagtgacgctctcgtttacagagaggcacatgcagagg
attggccgcctcctgcaggcgtccatgtttctgaactacatgtggcagaagatgagagtg
gtg
DBGET
integrated database retrieval system
