Tetraodon nigroviridis (spotted green pufferfish): GSTEN00033782G001
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Entry
GSTEN00033782G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03440
Homologous recombination
tng03450
Non-homologous end-joining
tng04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GSTEN00033782G001
03450 Non-homologous end-joining
GSTEN00033782G001
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
GSTEN00033782G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tng03032
]
GSTEN00033782G001
03400 DNA repair and recombination proteins [BR:
tng03400
]
GSTEN00033782G001
DNA replication proteins [BR:
tng03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
GSTEN00033782G001
DNA repair and recombination proteins [BR:
tng03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
GSTEN00033782G001
BRCA1-C complex
GSTEN00033782G001
NHEJ (non-homologous end-joining)
MRX complex
GSTEN00033782G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
AAA_15
SbcC_Walker_B
ABC_tran
AAA_13
AAA_22
AAA_29
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAG11723
UniProt:
Q4RIQ9
LinkDB
All DBs
Position
7
AA seq
1335 aa
AA seq
DB search
MSKIEKMSILGVRSFGIEDKDMQVISFFSPLTVLVGPNGAGKTTIIECLRYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGERVTIHRSMSCTQKAKNYSFKSLEQVITR
IKDGEKVSLSSKCADMDREMISSLGVSKPVLNHVIFCHQEESNWPLSEGKALKEKFDAIF
AATKYIKALDTMRQLRLKQALAVKECQMELGYLKLNKEKAQQIREAVATKEAQLMASRNS
VQQIENQIQPLEDRLTDIDIKLSKVMKLDNDIKALESRKKQMEEDNKELEETMEQVFQGS
DEQLQDNYHNHQRTVREKERRLTDCQKELEKAGRECQRLNRVKADLLVEQGRLQLEADRH
AHNIRTRDAQVRSLSSYLDLEGYDRTPFSALQLQSFHRHVTERLEQERQTLAGAMAELQE
KEQQKQQAIDDMRDKKTGLERTVELKRDLQGKKQQELRNIRAELQGLEGSSSRLQELESE
LAKAERELQSAVQGSNVEELKNEVVELQREKADLDRSQRQLDKEMETLNTHTTARTQMDM
LKREKTEKEDQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYSKSKEISATRDRLAKLNKN
LASSEQNKNHTAAELRKKEQQLASDEETFFNVCGNQDLEQDLSKLQEDLEKVSRQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPMESELQEVISGMQSKLRLVPDKLRNTEQDLK
RKERKRDDMVALRPVRQTIVQLQEKELPELRNRLQTVNREIEKLKSEVEEQESLLVILMS
EEETAKACLQDISLMDRYLMDLKEVERKIAQHSAKLQGVDLSRTVQQVSQEKQEIQHRLD
TTSSKMELKRKLIQDQQDQIQLLKSAVNETREEKLQLSSNMQKRQQLEDQCVEFTTEIQS
LTRDIREAKEQLSPLSVALERLQQEKQELLDRKRQRQEEGQEKINAINEKAKAVSALERE
ISKYVEEGKDEYKEQKESELQETNSQLHEAEKHKEKVSKEMGTIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVSKRDALRKEMGNMQVLQLRQERREVERQLEELKKNRSIAVGRQKG
FEEEILHYRKELREDQYEKADERHKNKMITLRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIVRDLWRSTYRGQGAALRQVTPARLLWTRLMALLPPDIEYIEIRSDLDDNASAGV
KRRTYNYRVVMVKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL
DRDNIVSLAHALVEIIKSRSRQRNFQLLVITHDEDFVELLGRSSYIEHFYRIRKNQDQNS
EITKCSISSLSAYLH
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagagaagatgagcattttaggggtgaggagctttggaattgaggataaa
gacatgcaagtcatctccttcttttctcctctgaccgtgctggttggacccaatggagcc
gggaaaacgactattattgagtgcctaaggtacgcaacatcgggagaacttccacctgga
tctaaaggaggtgcttttgttcatgacccaaaggacgcccacgagactgatgtgcgagca
cagatccgtcttttgttctccgatgtcaacggtgaaagagtgaccatccatcgctctatg
tcctgcactcagaaagccaagaactactccttcaagagcttggagcaggttattaccaga
ataaaagatggcgagaaggtgagcctgtcatcaaagtgtgccgatatggaccgagagatg
atttcctcactgggagtgtcgaagcctgtcctcaatcacgtcatcttttgtcaccaagaa
gaatcaaactggccactcagtgaaggcaaagcactcaaggaaaagtttgacgccatcttc
gctgccaccaagtatattaaagcgctggacacgatgcgtcagctgcggcttaaacaggcc
cttgcggtcaaagagtgtcagatggagctgggctacctgaagctgaacaaggagaaagcc
cagcagatcagagaagccgttgccaccaaagaggcccagctgatggcctccagaaacagc
gtccagcagatagagaaccagatccaaccactggaggatcggctgacagatattgacata
aaactgagcaaagtgatgaagctggacaacgatatcaaggctttagaaagcaggaagaaa
cagatggaggaggacaacaaggagctggaggaaactatggagcaggtcttccagggttcc
gatgagcagctgcaggacaattaccacaaccaccagaggacggtgagggagaaggagcga
aggctgacagactgccagaaggagctggaaaaagccggacgggagtgtcagagactcaac
agagtaaaggcagatctcctggtggaacaaggacgtctacagcttgaagcggaccgccac
gcgcacaacatcaggacccgcgacgctcaggttcgctctttatcatcctatctggacctg
gagggttacgaccgaacacccttctcagctctgcagctccagagctttcaccgtcacgtc
acggagaggctggagcaggagaggcaaaccttggctggggctatggctgagctgcaggag
aaggagcagcagaagcagcaggccatcgacgacatgcgagataagaagactggcctggag
agaacggtggagctgaagcgggacctgcagggaaagaagcagcaagagctcaggaacatc
agagcggagctgcaaggcctggagggctcatccagccgcctccaggagctggagagcgaa
ctggccaaagcggagcgagagttgcagagcgccgttcagggctccaacgtggaggagctg
aagaacgaagtggtggagctccagagggagaaggccgacctggaccgatcacagagacag
ctggataaggagatggagacgctcaacacgcacacgacagcacgcacacagatggacatg
ctgaagcgggagaagacggagaaggaggatcaggtgcggaagatcaaatcccggcacagc
gaggatctcgtgtcgctgctgggccactttcccaacaagagagagttggaggactggatc
tactccaagtccaaagagatcagcgctaccagggacaggcttgccaagctcaataagaat
ctggcgtccagtgagcaaaacaaaaaccacaccgctgccgagctacggaagaaggagcag
cagttggccagcgacgaagaaaccttcttcaacgtgtgcgggaatcaggacctggagcaa
gacttgagcaagctgcaggaagatctggagaaagtctcccgacaaagagccatgctggcc
ggagcgacggcggtttacacccagttcatcagccagctgacggaggagagggagccctgc
tgtcccgtgtgtcagcggacgttccccatggagtcggagctgcaggaggtcatcagcggc
atgcagtccaaactgcggctggtgccggacaagctgagaaacactgagcaggacctgaag
aggaaggagaggaagagggatgacatggtggccctacggcctgtcaggcagaccattgtg
cagctccaggagaaggagctgccggagttgagaaaccgcttgcagacggtaaacagagaa
atcgagaagctgaagagcgaagtagaggagcaggaatctttgctcgttatcctgatgtca
gaagaggaaacagccaaggcctgtctgcaagacatctccctcatggaccgatacctgatg
gaccttaaagaggttgagagaaaaattgcccagcattctgccaaactccagggagtagac
ctgagcagaaccgtacagcaagtcagtcaggagaaacaggagatccagcacaggctggac
accacttccagcaaaatggagctgaaacgcaagctgatccaggaccagcaggatcagatc
cagctgttgaaaagtgctgtgaatgagacaagagaagagaaactgcagctgagcagcaat
atgcagaaacgtcagcagctggaagaccagtgtgtggagttcaccaccgaaatccagtct
ctgacccgggacatcagggaggcgaaggagcaattgtctcccttgtctgttgctctggaa
aggctgcaacaggagaaacaggagctgctggatcgaaagaggcagcggcaggaagagggg
caggagaagattaacgccattaatgagaaagccaaggccgtctcggctctggaaagagaa
atcagcaaatacgtcgaggagggcaaggacgagtacaaagagcaaaaagagtcagaactt
caagaaaccaacagtcagctgcacgaggccgagaagcacaaagagaaggtcagcaaagag
atgggaaccatccgccaggatattgacactcagaaggtccaggagcgctggttgcaggac
aacttgacgttgaggaaacgcgtggaggagttaaaggaggtggtctccaaacgagacgcc
cttcggaaggagatggggaacatgcaggtcctgcagcttcgccaagaacgccgcgaggtg
gaacggcagttggaagagttgaagaagaaccgcagcattgcagtgggtcgccagaagggc
ttcgaggaggagatcctccattacaggaaagaactgcgagaagatcagtatgaaaaagct
gacgagcgccacaaaaacaagatgataaccttgaggaccacggagctggtcatcaaagac
ctggatctctactataaagccctggatcaaaccatcatgaaattccacagcatgaagatg
gacgagatcaacaagattgtcagagacctgtggcgcagcacctacaggggtcaaggtgcg
gcgttgcgccaggtgacgcccgctcggcttctctggacgcgtctcatggctctccttcct
ccagacatcgagtacatcgagatcaggtccgacctggatgataacgcgtctgccggcgtc
aagcggaggacctacaactacagggtcgtcatggtgaagggcgacaccgccctggacatg
agggggcgctgcagcgctgggcagaaggtgctggcctccctcatcatccgcctggctctg
gccgagaccttctgcctgaactgcgggattctggccctggacgagcccaccaccaacctg
gaccgggacaacatcgtgtccctggcacacgcgcttgtggagatcatcaagagccgctcc
cgacagcggaacttccagctgctggtcatcacccacgacgaggacttcgtggagctgctg
ggccggtccagctacatcgagcacttctaccgcatccgcaagaaccaggaccagaactct
gagatcacaaagtgcagcatctcctccctctcagcgtacctccac
DBGET
integrated database retrieval system
