Thioalkalivibrio nitratireducens: TVNIR_0101
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Entry
TVNIR_0101 CDS
T02408
Symbol
mutM_[H]
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TVNIR_0101 (mutM_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tni03400
]
TVNIR_0101 (mutM_[H])
Enzymes [BR:
tni01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TVNIR_0101 (mutM_[H])
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TVNIR_0101 (mutM_[H])
DNA repair and recombination proteins [BR:
tni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TVNIR_0101 (mutM_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AGA31814
UniProt:
L0DQP2
LinkDB
All DBs
Position
complement(85865..86680)
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AA seq
271 aa
AA seq
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MPELPEVETTRSGLEPHLQGRRIRELVVREPRLRWPVPPELPAMLSGRQVRRLDRRAKYL
LLGTDGPGVLLHLGMSGSLRRCLPDAPLRPHDHLSFRLDDGFEIRLHDPRRFGCCLPLPD
PPRLHPLLSTLGPEPLGDAFDGDYLHYLSRGRRAPVKAFIMDQQVVVGVGNIYASEALFL
AAIRPGRAAGRVSRAEYRALATSVRSVLARAIAEGGTTLRDFVREDGTHGYFRQRLRVYG
REGQPCVSCATPIRTRRIGNRASSYCPACQR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccctgaggtcgagacgacccgtagcggcctcgaaccccacctgcaggga
cgccggatccgggaactggtcgtgcgtgaaccgcggctgcgctggccggtgccaccggaa
ctcccggcgatgctctcggggcggcaggtgcgaaggctcgaccggcgcgcgaaatacctg
ctgctgggaaccgacggccccggcgtgctgctgcacctcgggatgtcgggaagcctgcgc
cggtgcttgccggacgccccgctgcgcccgcacgaccacctgagcttccggctcgacgac
ggcttcgagatccggctgcacgacccgcgccgcttcggctgctgcctgccgctaccggac
ccgccgcggctccacccgctgctgtcgacgctgggcccggaaccgctcggcgatgcgttc
gatggcgactacctccactacttaagccgcgggcgccgcgcgccggtgaaagccttcatc
atggaccagcaggtggtcgtcggcgtgggcaacatctacgccagcgaggcgctgtttctc
gccgccatccgtcccggacgggccgccggccgggtatcccgagccgaatatcgcgcgctc
gccaccagcgttcgcagcgtcctcgcccgggcgatcgccgaggggggcaccacgctgcgg
gacttcgtacgcgaggacggcacccacggctatttccgccagcgcctgcgcgtatacggc
cgcgagggccagccctgcgtttcctgcgcgaccccgatccgcacccgccgcatcggcaac
cgcgccagcagctactgccccgcctgccagcgctga
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