Thioalkalivibrio nitratireducens: TVNIR_0138
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Entry
TVNIR_0138 CDS
T02408
Symbol
recD_[H]
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TVNIR_0138 (recD_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tni03400
]
TVNIR_0138 (recD_[H])
Enzymes [BR:
tni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
TVNIR_0138 (recD_[H])
DNA repair and recombination proteins [BR:
tni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TVNIR_0138 (recD_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
Helicase_RecD
AAA_22
UvrD-helicase
AAA_28
Mg_chelatase
SLFN-g3_helicase
UvrD_C
NTPase_1
nSTAND3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AGA31851
UniProt:
L0DU14
LinkDB
All DBs
Position
132334..134448
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AA seq
704 aa
AA seq
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MSRPVAAAALASADALLDLLDRWVEHGWLRALDRALARFLREQVPEAAPLLLLGAALASH
QLGRGHACLDLEAALDAPDRTLSLPPDGEPGEDPPVRPAALLAPVTLQDWTASLDHPALV
APAAGATPLVLDRGRLYLRRLWECEQRIAESVAERVAWFSELRSGLDPAAMRTWLDHLFG
ARTEREIDWQRAACALAAAGAFGVITGGPGTGKTTTVVRLLALLQALQLERASALPLRIR
MAAPTGKAAARLNASVAGAVHALSLPDDECGARIRAAIPAEVSTVHRLLGSRPGSRRYRH
HAGNPLPLDVLVVDEASMIDMELMTSVVQALPTAARLILLGDKDQLASVEAGAVLGEICA
RAGAGHYSPATSRWLEAVSGERIPDRLRNPAGGPLDQHVVMLRRSYRFGESSAIGRLARS
VNAGDAEAARAIVSGSGALPDLAAVSLNGPEDAVFERYVLHGRDDAARDRRRDDLPTGQA
HYLRLMRSLDPGDDAVPDATNRWAGQVLDAHSGFQLLSAVRRGPWGVETLNRRIEAALRS
EGLIPSSGIWYAGRPVIVTANDYGLGLMNGDIGVTLARPMAEADGRRVRALRVAFPAGDG
SGRVRWFVPSRLVNVETVYAMTVHKAQGSEFDHAALLLPERENPVLTRELLYTAITRARC
WFTLIEPRAGVLEQAVRRRVLRGTGLGDALRGRMSGQHISGGGR
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagccgacccgtggccgctgcggccctagcgtcggccgacgcgctgctggacctgctg
gatcggtgggtcgagcatggctggctgcgggccctagatcgtgcgctcgcacgcttcctg
cgcgagcaggtaccggaggccgcgccgctgctgctgctcggcgcggcactagcgagccat
caactgggccgggggcacgcctgcctggacctggaagcggcactggacgccccggaccgg
acgctgtcgctgccgccggatggcgaaccgggagaggatcccccggttcggccggcggcg
ctgctcgcgccggtcacgctgcaggactggaccgcatccctggatcacccggcactggtg
gcccctgccgccggggcgacgccgctggtgctggaccgcggccggctctacctgcgccgg
ctctgggaatgcgagcagcgtatcgcggagtcggtcgctgaacgcgtcgcctggttcagc
gagctgcgttccggtctggatccggccgcgatgcggacctggctcgatcacctgttcggg
gcccggacggagcgcgagatcgactggcagcgcgcggcctgcgcgctggcggcggccgga
gccttcggcgtaatcaccggcggaccgggcaccggcaagaccaccacggtggtgcgcctg
ctcgcgctgttgcaggcactgcagctcgagcgcgcgtctgcgttgccgctgcgcatccgc
atggccgcgcctacgggcaaggccgctgcccgcctgaacgcctcggtggccggcgccgtg
catgcgctcagcctgccggacgacgaatgcggggcgcggatccgcgccgcgatcccggcc
gaggtcagcacggtgcaccggctgctggggagccggcccggcagccgccggtaccggcac
catgcgggcaacccgctgccgctggatgtgctggtggtcgacgaggcgtcgatgatcgac
atggagctgatgacctccgtggtccaggcgctgccgaccgcggcgcggttgatcctgctg
ggggacaaagatcagctcgcatcggtggaggccggcgcggtgctcggcgagatctgtgca
cgcgccggtgccgggcattactcgcccgcgacgagccgctggctggaggcggtcagcggc
gagcggatccccgataggcttcggaacccggccggcggaccgctggaccagcacgtcgtg
atgctccggcgcagttaccgtttcggcgagagcagcgcgatcggccgtctggcccgctcg
gtgaacgcgggtgacgcggaggcggcccgggccatcgtgtcgggcagcggggcgttgccc
gatctcgccgcggtctcgctgaacggtcccgaggacgcggtattcgagcgctatgtgctt
cacggccgcgacgatgccgcgcgggaccgacgaagagacgacctgcccaccggtcaagcg
cactacctgaggctgatgcgcagcctggatccgggcgacgacgcggtgccggacgcgacc
aatcgctgggccgggcaggtcctggatgcgcattcggggtttcagctgctgagcgcggtg
cgccgtggcccctggggggtcgagacgctgaaccgccgcatcgaggccgcactgcgctcg
gagggcctgattccctcgagcgggatctggtacgcgggacgaccggtgatcgtgaccgcg
aacgactacgggctcggcctgatgaacggagatatcggggtcacgcttgcccgccccatg
gcagaggcggatggacgccgggtgcgtgcgctgcgcgtcgcgtttccggctggcgacggc
agcggccgggtgcgctggttcgtgccgagccggctggtgaacgtcgagacggtctacgcg
atgacagtgcacaaggcgcagggatcggagttcgaccacgcggccctgctgctgcccgag
cgtgagaacccggtcctgacgcgggaactgctgtacacggcgatcacgcgcgcgcggtgc
tggttcaccctgatcgaaccgcgggcgggggtcctggagcaggccgtccgccgccgcgtg
ctacgcggtaccggcctcggcgacgcgctgcgcgggcgcatgtcggggcagcacatctcg
ggtggcggacgatga
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