Thioalkalivibrio nitratireducens: TVNIR_1976
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Entry
TVNIR_1976 CDS
T02408
Symbol
hrpB_[H]
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
tni
Thioalkalivibrio nitratireducens
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tni03019
]
TVNIR_1976 (hrpB_[H])
Enzymes [BR:
tni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TVNIR_1976 (hrpB_[H])
Messenger RNA biogenesis [BR:
tni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TVNIR_1976 (hrpB_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
AAA_30
AAA_19
HA2_C
HA2_N
AAA_22
AAA_11
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGA33637
UniProt:
L0DXA5
LinkDB
All DBs
Position
2004207..2006687
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AA seq
826 aa
AA seq
DB search
MNTELPVATVLPALAAALNDPGVALLQAPPGAGKTTVVPLALLDAPWRRDRILLLEPRRL
AARAAARRMATMLGERVGSTVGISTRVERKVGPGTRIEVVTEGILTRRLQRDPALEDTGL
VIFDEFHERSLQADLGLALCLQARELLRPDLRLLVMSATLETGGITRLLPAAPVIRTEGR
SHPVHIDHRPPAPAPARAADATAVAVKRALATLPGSILVFLPGRREIDRATHGLEALAGS
GIRVTPLHGQMPPEAQDEAIRPAPEGTRKVVLATDIAETSLTIEGIAVVIDSGLARRPRF
DPRRGLSRLETVRISRASAAQRCGRAGRLGPGVCIRLWSKSDEQRLPAHASPEILEADLA
PLALTLACWGADADELAWLDPPPAPALAQARDLLQQLGALDDTGTVTVHGRAMDALGTHP
RVAHMLLTANERGLGYEAALLAALLEERDPLDRALAGSDIRARLRALTATDASMSSAARR
RLRTQAARWAKQLQCREPAQLDPEVAGALLALAYPDRVALRRPGPEGRFLLASGRGAFFP
REDDLAQAPCIVAAVLDAGQREALIHLAAPLDRSALAFLLPGLVRSEEHVEWDADAGAVN
ARVEQRLGALVLESRPLDGVAPEVAARMLLDAVAARGPESLPWTPESRRLRARMAFARAQ
DGDAWPDVSDEGLRRILHTWLAPWVTGMGRMSHLRTLDLGAALRALLDWPQQQRLDRIAP
THLTVPSGSRVAIDYGDPGNPVLAVRIQEVFGWSDTPRIGNDSVPLTLHLLSPARRPVQV
TRDLAGFWARTYAEVKKDLKGRYPKHAWPDDPLNARALRGTKRARQ
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
ttgaatacggagctgcccgtcgccacggtcctgccggccctggccgcggccctgaacgac
ccgggcgtcgcattgctgcaggccccacccggtgccggcaagaccaccgtggtgccgctg
gccctgctggacgcaccgtggcgccgggaccggatcctgctgctggagccccggcggctg
gcggcgcgcgccgcggcccgccgtatggcgacgatgctcggcgaacgcgtcggatccacg
gtcggcatcagcactcgggtcgagcgcaaggtcggaccgggcacccggatcgaggttgtc
accgagggcatcctgacccggcgcctgcagcgcgacccggcgctggaagacaccggcctg
gtgatcttcgacgagtttcacgaacgcagcctgcaggcggacctcggcctggcactgtgc
ctgcaggcccgcgaactgctgcgccccgacctgaggctgctggtgatgtcggcgacattg
gaaaccgggggcatcacgcgcctgctgcccgccgccccggtcatccgcaccgagggccgc
agccatcccgtgcatatcgaccaccgccctccggcgccggcccccgcacgtgcggccgat
gcaaccgcagtcgccgtgaaacgggcactggcgaccctccccggcagcatcctggtcttc
ctgccggggcggcgcgagatcgatcgcgcaacccacgggctcgaggccttggcaggatcc
ggaatccgggtcacgccgctgcacgggcagatgcctcccgaggcccaggacgaggcgatc
cgtccggcaccggagggaacgcgcaaggtcgtgctggccaccgacatcgccgaaaccagc
ctgaccatcgagggcatcgcggtggtgatcgattccgggctggcgcgcaggccgcgcttc
gacccgcgccgcggactgagccggctcgagaccgtgcgaatcagccgggcgagcgccgcc
cagcgctgcggccgtgccggcagactgggtccgggagtctgcatccgcctgtggtcgaaa
tccgacgagcagcggctgcctgctcatgcgtcaccggagatcctcgaggccgacctcgcg
ccgctggcgctgactctcgcctgctggggcgccgacgcggacgagctcgcctggctggat
cccccgccggcacccgcactggcccaggcgcgcgacctgctgcaacagcttggcgcactc
gatgacaccggcacggttacggtacacgggcgggcgatggacgcgctcggcacgcatccg
cgagttgcgcacatgctgctgaccgcaaacgaacgtggcctgggatacgaagcggcgctg
ctggctgcgctgctggaggagcgcgacccgttggaccgggcgttggccggcagcgacatt
cgtgcccgactgcgtgccctgacggcaaccgacgcgtcgatgtcatcggcagcgcgccgt
cggctccgtacccaggcggcccggtgggcgaagcaactgcaatgccgggagcccgcgcag
ctcgatcccgaggtcgccggcgcactgctcgccctcgcctacccggatcgggtcgcgctg
cgccgcccggggccggagggccgcttcctgctggcgagcgggcgcggcgcgttttttccg
cgcgaggatgacctcgcgcaggccccctgcatcgtcgcggcggttctggatgccggccag
cgcgaggcgctgatccatctcgcggcaccgctggaccgctccgccctcgcgttcctgctc
cccggactggtgcgcagcgaagaacacgtggagtgggacgccgacgccggagcggtgaac
gcccgcgtcgaacagcggctgggcgcgctggtgctcgagagccggccgctggacggcgtc
gctcctgaggtcgcagcccggatgctgctcgacgcggtcgcggcccggggcccggaatcg
ctgccctggaccccggagagccgcaggctgcgcgcgcgcatggcttttgcccgcgcacag
gacggcgacgcctggccggacgtcagcgacgaggggctgcgccgtatcctgcacacctgg
ctcgcgccctgggtcaccgggatgggccggatgagccacctgcgcacgctggacctcggc
gccgcgctgcgcgcgctgctcgactggccgcagcagcagcgactggaccgcatcgcgccc
acccacctgacggtacccagcggctcacgcgtagctatcgactacggcgaccctggcaac
ccggtcctcgcggtccggatccaggaggttttcggctggtccgatacgccccggatcggc
aatgacagcgtaccactgactctgcatctgctctcgccggcgcggcggccggtgcaggtg
acacgcgacctggccggattctgggcgcgcacctacgctgaagtgaagaaagacctgaag
gggcgctacccgaagcacgcctggcccgatgacccgctgaacgcccgggcgctgcgtggc
acgaaaagagcacggcagtga
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