Thioalkalivibrio nitratireducens: TVNIR_2007
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Entry
TVNIR_2007 CDS
T02408
Name
(GenBank) diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
Organism
tni
Thioalkalivibrio nitratireducens
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_3
PAS
PAS_4
PAS_8
PAS_7
Motif
Other DBs
NCBI-ProteinID:
AGA33668
UniProt:
L0DX95
LinkDB
All DBs
Position
complement(2047183..2050200)
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AA seq
1005 aa
AA seq
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MAREAWFKRTVTGSAGGAIAPSAAAAMAAGAVVALFGLAVMLAWHAGYPGLLPWQADLVP
VHYNTALALFLVGGGLMLLLVGVARGAAVAGVAVLALGALTLSQYLFSVDIGIDQRIVGA
PSMPATSHPGRMAPNTALGLMLTGLALALPALLGRGRVLLSILGSAGVIVFGLGLVALAG
DAMRLESVYGWGALTRMAVQTAAALVVIGTALLLTAWYEGSRRDVPLLGWLPVPAGLGVF
TILVLAWQASFDIGGGAAAPQGWSVHALLLLGALLAFVLAVALNRAHVAQVRWKAAESDR
GALRAEIAERRGTEQRLRASESLVQMAANLARIGGWEVDLEDERAWWSDEVCRIHEMPPG
TSIRVDEGIAFYAPEWRERIREVFTRAARDGIPYDEEMQIITASGKRRWVRAIGQPVHNP
EGTIVRVQGAFQDITDRRKIEEALRRAAMVFEHTRDGVVVTDADVRILSVNRAFTEITGY
TEDEVRGRNPSVLASGHHDSAFYRKLWEQLRELGHWQGEIRDRRKNGETYAEWLTIDSVR
DDAGNVTHYVGVFTDISGIKESQERLEFLAHHDALTGLPNRVLLESRLAKALERAQRRGH
RVALLYIDLDRFKAINDGLGHPVGDELLRQVPDRLHPRLRREDTLGRAGGDEFMLLLEHM
DRADEAARVARDVLALLQAPFTLPSGHEVFIGASIGISLFPDDGASSSELVRNADSAMYR
AKELGRNTFHFYTEELTRAAGRRLAMETRLRRAIEHREFVLYFQPQVSVADGRTIGVEAL
VRWNDKEKGLVGPDEFIPVAEESGLIAPLGLWVLKEACRQLQVWRHRGLALPQVAVNFSS
QQFLLQDVTARVSEALELSGLPPEFLELEITESLLMRQGDSAPAMLRSLKDLGVRLVIDD
FGIGYSSLAYLREFPIDRLKIDQSFVRDIETDHSAREIASTVVAMGHNLSLEVLAEGVEN
VRQLEILKMLECDAYQGFFASAPLPAEDLPGWLAAWPSPSGRSNT
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggccagggaagcttggttcaagagaaccgtgaccggttcggcgggtggagcgatcgcg
ccgagtgcggcagcggcgatggctgccggagcggtcgtcgcattgttcggtcttgcggtg
atgctggcgtggcacgccggataccccgggctgttgccgtggcaggcggacctggttccc
gttcactacaatacggcgctggcgctgttcctggtcggcggtggcctaatgttgctgctc
gtcggcgtcgccaggggcgccgcggtggcgggtgtggcagtcctcgctctcggggccctg
accctgtcgcagtacctgttctcggtcgacatcggaatcgatcagcgcatcgtcggggct
ccctcgatgcccgccacctcgcatccggggcgcatggcaccgaacacggcgctggggctg
atgctgacggggctggcgttggcgctgccggcgctcctgggtcgtggccgtgtgctgctg
tccatactcggttcagcgggtgtgatcgtgttcggactggggctggtggcgctcgcgggt
gacgcgatgaggttggagtcggtctatggctggggggcgctgacgcgtatggctgtgcag
accgcggcggcgctggtggtgatcggaacagcgctgctgttgacggcctggtacgagggt
tcccgccgcgatgtgccactgctgggctggctgccggtgcctgcggggttgggcgtgttc
acgatcctcgtgctggcatggcaagcatcctttgacatcggcggtggcgcagcagccccg
caagggtggagtgttcatgcgctgctgctcttgggggcgttgctggcgttcgtgctcgcc
gttgcgctgaaccgcgcccatgtcgcgcaggtccgctggaaggccgccgagtccgatcgc
ggggcgctgcgggctgagatcgccgagcgcagggggaccgagcagcggttgcgcgccagc
gaaagcctggtgcagatggccgcgaacctggcccgtatcggaggctgggaggtcgatctg
gaggacgagcgcgcgtggtggtcggacgaggtctgccgcattcacgaaatgccgcctgga
acctcgattcgcgtggatgaaggtatcgcgttctacgccccggaatggcgcgagcggatc
cgcgaggtgttcaccagggcggcgcgcgacggcattccttacgacgaggagatgcaaatc
atcaccgcatcgggaaagcggcgctgggtgcgtgcgatcgggcagcccgtgcataacccg
gagggcacgatcgtccgggtgcagggagccttccaggatattacggaccgcagaaaaatc
gaggaggcgttgcgccgcgctgcaatggtcttcgagcatacccgggacggtgtggtggtg
accgatgccgatgtgcgcatcctgtcggtgaaccgcgccttcaccgagattaccggctat
accgaggacgaggtgcgcgggcgcaaccccagtgtgctggcgagtggtcaccacgactcg
gcattttatcgcaagctctgggaacagttgcgcgagttgggtcactggcagggcgagatc
cgggaccggcgcaagaacggggaaacctacgccgagtggctgacgatcgacagcgtgcgc
gacgacgccgggaacgtcacccattacgtcggcgtgttcaccgatatctcggggatcaag
gaaagccaggaacggctcgagtttctggcccaccacgacgcgctgaccgggctgcccaac
cgcgtgttgctcgaatcccggctcgcgaaggcgctcgagcgcgcgcagcggcgcgggcac
cgggtggcactgctctatatcgacctcgaccggttcaaggccatcaacgatggtctcggg
catccggtcggcgatgaactgctgcgccaggtgccggaccggctgcacccccggctccgc
cgggaggataccctcgggcgcgccggtggcgacgagttcatgctcctgctcgagcacatg
gatcgggcggacgaggcggcccgcgtggcgcgggacgtgctggcgctgctgcaggcaccc
ttcacgctgcccagcggccacgaagtgttcatcggtgccagcatcggcatcagcctgttt
cccgatgacggcgcgagcagcagcgagctcgtccgcaacgccgactcggcgatgtatcgg
gcgaaggaactgggccgaaacaccttccatttctataccgaggagctgacccgcgcagcg
ggccgccggctggcgatggagacccggctgcgcagggcgatcgagcatcgggaattcgtg
ctgtatttccagccccaggtctcggtcgccgatgggcggacgatcggggtcgaggcactg
gtgcgctggaacgacaaggagaaggggctggtcggtcccgacgagttcattccggtggcc
gaggaatcgggcctgatcgccccgctgggcctctgggtgctgaaggaggcatgtcgccag
ctccaggtctggcggcatcgagggctcgccctgccgcaggtagcggtcaatttctcgagc
cagcagtttctgctgcaggacgtgacggcgcgggtatcggaggcactggaactcagcggc
ctgcctccggagttcctggaactggagattaccgagtccctgctgatgcggcagggcgac
tcggctccggcgatgctgcgcagtctgaaggatctcggcgtaaggctcgtgatcgacgat
ttcgggatcggttactcgtcgctggcgtatctgcgcgagtttccgatcgacaggttgaag
atcgaccaaagctttgtccgcgatatcgaaaccgatcacagcgcgcgcgagatcgcgtcg
acggtggtcgcaatggggcacaacctctcgctagaggtattggccgagggggtggagaat
gttcggcaactggagattctgaaaatgctggagtgcgatgcctaccaggggtttttcgcc
agtgccccgctgccagccgaggacctgccgggctggctcgcagcctggccttccccatcg
gggcgtagtaatacctag
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