Thioalkalivibrio nitratireducens: TVNIR_2516
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Entry
TVNIR_2516 CDS
T02408
Name
(GenBank) Fis family two component sigma-54 specific transcriptional regulator - like protein
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TVNIR_2516
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
tni02022
]
TVNIR_2516
02035 Bacterial motility proteins [BR:
tni02035
]
TVNIR_2516
Two-component system [BR:
tni02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
TVNIR_2516
Bacterial motility proteins [BR:
tni02035
]
Pilus system
Twitching motility proteins
TVNIR_2516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA_16
HTH_30
Motif
Other DBs
NCBI-ProteinID:
AGA34159
UniProt:
L0DX25
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All DBs
Position
2602723..2604096
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AA seq
457 aa
AA seq
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MSIKHVLVVDDEPDICELLEITLQRMGIDTTTTTRMTRTIELLEERRFDLCLTDMRMPDG
DGLELVRLIQDRYPELPVAIITAHGSIDTAVQALKLGAFDFVTKPVDLNLLRRLIDSALR
LGAGGAPESAQGSGEGAPTTNPLLGRSPAMVQLRNRVARLARSQAPVIILGESGSGKELV
AREIHRLGPRAGGPFVPVNCGAIPAELMESEFFGHQKGAFTGAVRTRVGLFREAHGGTLL
LDEVAELPLPLQVKLLRALQERAIKPVGASREEPVDVRILSATHRDLAADVAEGRFRQDL
YYRLNVVELRVPPLRERHEDLEELARHILARIAGEWGIPGLSLSEDALARLRQHPFPGNV
RELENILERAAVMVDGRVIDSSALDFPNCSRAGTGSGGNPATVMEGQVALDDHLAEQERR
ALEAALAQTAGNRTAAARVLGLSFRQMRYRLKKLGID
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcaagcatgtgctggtggtggatgacgaacccgatatctgcgaactgctggag
atcactctgcagcgcatgggcatcgataccaccaccacgacgcgcatgacccggacgatc
gaactgctggaagagcgccggttcgacctctgcctgaccgacatgcgcatgcccgatggc
gatgggctggagctggtgcggctgatccaggatcgataccctgaactgcccgtcgcgatc
atcaccgcccacgggagcatcgacaccgcggtgcaggcactgaaactgggggccttcgac
tttgtcaccaagccggtcgatctgaacctgctgcgcagactcatcgacagcgcgttgcgg
ctgggagcgggtggcgcaccggagtccgcccagggatcgggcgaaggagcaccgaccacc
aacccgctgctcgggcgttcgccagcgatggtacagctgcgcaaccgggtggcacgcctg
gcccgcagccaggcaccggtgatcatcctgggagagtccgggtccggtaaggaactggtg
gcccgcgagatccaccgcctggggccgcgggccggcgggccgttcgtcccggtcaactgc
ggtgcgatcccggccgagctgatggagagtgagttctttggccatcagaaaggcgcgttc
accggcgcggtgcggacccgggtcggcctgttccgcgaagcgcacggcggcaccctgttg
ctcgacgaggtggccgaactcccgcttccgctgcaggtaaagctgctgcgtgccctgcag
gaacgggcgatcaagccagtgggcgcatcgcgtgaagagccggtcgacgtgcgcatcctg
tcggcgacccatcgcgaccttgccgcggatgtcgcggaaggacgtttccgacaggatctg
tattaccggctcaacgtggtggagctgcgggttccgccactgcgtgaacgccacgaggat
ctcgaggaactggcgcggcacattctcgcgcgcatcgccggggagtgggggattccaggt
ctgtcgctgtccgaggatgcgctggcacggctcaggcagcatccgtttccgggcaacgta
cgcgagctggagaacatactggagcgcgccgcggtcatggtggacgggcgggtcatcgac
agcagcgcgctcgattttccgaactgttccagggctggaaccgggtccggcggcaacccc
gccacggtcatggagggccaggtcgcgctggacgaccacctggccgagcaggaacgccgc
gcgctggaggctgcgctggcgcagaccgcgggcaaccgcaccgcggccgcccgcgtgctg
ggtctgagctttcggcagatgcgctatcggctgaagaagctgggcatcgactga
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