Thioalkalivibrio nitratireducens: TVNIR_2522
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Entry
TVNIR_2522 CDS
T02408
Symbol
holA_[H]
Name
(GenBank) DNA polymerase III delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03030
DNA replication
tni03430
Mismatch repair
tni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TVNIR_2522 (holA_[H])
03430 Mismatch repair
TVNIR_2522 (holA_[H])
03440 Homologous recombination
TVNIR_2522 (holA_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tni03032
]
TVNIR_2522 (holA_[H])
03400 DNA repair and recombination proteins [BR:
tni03400
]
TVNIR_2522 (holA_[H])
Enzymes [BR:
tni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TVNIR_2522 (holA_[H])
DNA replication proteins [BR:
tni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TVNIR_2522 (holA_[H])
DNA repair and recombination proteins [BR:
tni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TVNIR_2522 (holA_[H])
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
HP_1247_M
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
AGA34165
UniProt:
L0DYX4
LinkDB
All DBs
Position
complement(2607878..2608888)
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AA seq
336 aa
AA seq
DB search
MNIAPDRLSSALDRGLKPIYVILAEEPLQALEAGDAVRAAARAGGFAARTVLDLAASGDW
GAFEAAVRDRSLFAERGLIDLRLPSGKPGRTGAEQLARYARAPEPDLILLLQLPRPDRDM
RKAAWFKVLERAAVMVHARPVPPNRLGAWIRERLVRAGIGIEPEALALLAARVEGNLLAA
RQEVEKLKLAGVTEIDLDTLRQGLVDVARYDLFGLPAVALSGDTARALRMLRGMLAEGQP
EPLILWALARDIRALARASERRAAGEPAAQATRGFWGTDAAALRRAVDRVDPVGARRLLV
QAATVDRVIKGREAGNAARQLVDLVAALSGRPLLAA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
gtgaacatcgctcccgaccggctttcgtcggcgctggaccggggcctgaagccgatctac
gtgatcctcgcggaggagccgttgcaggcactggaggccggcgatgcggtgcgcgccgca
gcacgtgccggcggctttgccgcgcgcaccgtgctggatctggccgcgagcggcgactgg
ggcgcattcgaggcggcggtgcgcgatcggtcgctgttcgccgagcggggcctgatcgat
ctgcgccttccttccggcaagcccggccgcaccggggccgagcagctcgcgcgctacgcc
cgcgcgccggaaccggacctgatcctgctgctgcagctgccgcggccggaccgggatatg
cgcaaggcggcctggttcaaggtgctggaacgcgcggccgtgatggtgcatgcgcggccg
gtgccgccgaatcggctcggggcctggatccgcgaacgcctggtgcgggcgggcattggc
atcgagcccgaagcgctggcgctgcttgcggcgcgggtcgagggcaacctgctcgccgcg
cggcaggaagtggagaagctcaagctggccggggtcaccgagatcgacttggacacgctg
cgacagggcctggtcgacgtggcccggtacgatctgttcggccttccggcggtcgcgctg
tccggggataccgcgcgggcgctgcgcatgctgcgcggaatgctggccgaggggcagccc
gaaccgctgattctttgggccctggcacgcgacatccgcgccttggcgcgggcatccgaa
cggcgggccgccggggaaccggcggcacaggccacccggggattctggggtaccgatgcc
gccgcgctgcgcagggccgtcgatcgtgtcgatccggtcggcgcacgtcgcctgctggta
caggccgcgaccgtggatcgggtgatcaagggccgggaagcgggcaacgccgccaggcag
ttggtagacttggtggcggcgctgtcgggccggccgctgctggcggcctga
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