Thioalkalivibrio nitratireducens: TVNIR_2580
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Entry
TVNIR_2580 CDS
T02408
Symbol
rpoC_[H]
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TVNIR_2580 (rpoC_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tni03021
]
TVNIR_2580 (rpoC_[H])
03400 DNA repair and recombination proteins [BR:
tni03400
]
TVNIR_2580 (rpoC_[H])
Enzymes [BR:
tni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TVNIR_2580 (rpoC_[H])
Transcription machinery [BR:
tni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TVNIR_2580 (rpoC_[H])
DNA repair and recombination proteins [BR:
tni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TVNIR_2580 (rpoC_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AGA34221
UniProt:
L0E0P4
LinkDB
All DBs
Position
complement(2662927..2667147)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLNLFKQQTQPEEFDAIRIGLASPDQIRAWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLKDIEKVLYFESFIVVDPGFTTLERGQLLTDEEYLEAIEEHGDDFVALM
GAEAVLELLKNIDLQAEAVRLRTELSETGSETKIKRLGKRLKLVESFLESGNKPEWMIMS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKRMALELFKPFIFGKLQRRGLATTIKAAKKAVEKEGPEVWDILEEVIREHP
VLLNRAPTLHRLGIQGFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMSSNNVLSPANGEPIIVPSQDIVLGLYYLSRERVNAKGEAMVFADVDEVHRAYENG
VVDLHARIQVRIADTDGGNDASDGPPARIRRETTVGRAILSNILPQGLPFSLIDRELSKK
AISRLINACYRRLGLKDTVVFADQLMYLGFRFSTRAGVSFCADDMVIPDEKAEILGVAEE
QVKEIEEQYSSGLVTKGERYNKVVDIWSHCNDQVAKAMMDHLGKEQVTTREGERVAQSSF
NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVSQDVVVTEHDCGTEQGLLMKAIIEGGDVVEPLRDRV
LGRTTARDILKPGGDDVLVVAGELLDEARVDMLDENGVDEVWVRSAITCETRQGICAKCY
GRDLARGHLVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAVTVSAIQVKNAGQIR
LHNIKTVVNKHGNLVAVSRSGELGVIDEAGRERERYKVPYGASISVKEGDAVVAGQEVAI
WDPHTHPIITEVAGRVQLVDFVDNVTVTKETDEFTGLSSNVVMDHKSRSAAGRDLRPTVR
LIDEDGNDLFIAGTDMPAQYLLPAGAIFNLDDNARVEVGDVIARLPQESSKTRDITGGLP
RVADLFEARKPKDAAVLAEISGTISFGKETKGKQRVVITPDRGDPQETLIPKYRNVNVFE
GERVERGEVIVDGELDPHDILRLRGATVLAEYHVQEIQDVYRLQGVKINDKHIEVILRQM
IRKVVITDPGDTRLLAGDQIDRARVIEENEKLEGDQRPATYERVLLGITKASLVTESFIS
AASFQETTRVLTEASTRGARDELRGLKENVIVGRLIPAGTGLAYHKERRRKRQLELPSFD
LMGSEAAASEVTTLPDNGGEPGTSAD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctcctcaatctgttcaagcaacagacccagccggaagaattcgatgcgatt
cgcatcggcctcgcgtcgccggaccagatccgggcctggtctttcggcgaggtgagaaag
cccgagacgatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgcgaag
atcttcggtccggtgaaggactacgagtgcctgtgtggcaagtacaagcgtctgaagcac
cgcggcgtggtctgcgagaaatgtggcgtcgaggtgacgcagaccaaggtgcgccgcgag
cgcatgggtcacatcgacctggcgtctccggtcgcgcacatctggttcctgaagagcctg
ccgtcgcggatcgggctgttgctcgacatgacgctgaaggacatcgagaaggtcctgtac
ttcgagtcgttcatcgtcgtcgacccgggtttcaccacgctcgagcgcggccagctgctg
accgacgaggaatacctcgaggcgatcgaagagcacggcgacgacttcgtcgcgctgatg
ggcgccgaggccgtgctcgaactgctgaagaacatcgacctgcaggccgaggcggtgcga
ctgcgcaccgagctgtcggagaccgggtccgagaccaagatcaagcgcctcggcaaacgc
ctgaaactggtcgagtcgttcctcgagtccggcaacaagccggagtggatgatcatgtcg
gtgctgccggtgctgccgccggacctgcgcccgctggtgccgctggacggcggccggttc
gcgacctccgatctgaacgacctctaccgccgggtgatcaaccgcaacaaccgcctgcgc
cggctgctggaactgaacgcaccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgacgcgctgctcgacaacggccgccgcggccgcgcgatcaccggaaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggacgcttccgccag
aacctgctcggcaagcgcgtcgactactccggccgctcggtgatcgtggtcggcccgacg
ctgcgcctgcaccagtgcggcctgcccaagcgcatggcgctggaattgttcaagccgttc
atcttcggcaaactgcagcggcgtggtctggccaccacgatcaaggccgcgaagaaggcg
gtcgagaaagaaggcccggaggtctgggatatcctcgaggaagtgatccgcgagcacccg
gtgttgctgaaccgcgcgccgacgctgcaccgcctgggtatccagggcttcgagccggtg
ctgatcgagggcaaggcgatccagctccacccgctggtctgcgcggcgttcaacgcggat
ttcgacggtgaccagatggcggtgcacgtaccgctgtcgctcgaggcgcagctcgaggcg
cgcacgctgatgatgtcgtcgaacaacgtgctgtcgccggccaacggtgagccgatcatc
gtcccgtcgcaggacatcgtgctcggattgtattacctgtcgcgcgagcgggtgaatgca
aagggcgaggcgatggtgttcgcggacgtcgacgaagtgcaccgcgcctacgagaacggg
gtggtcgacctgcatgcgcggatccaggtgcggatcgccgacaccgacggcgggaacgat
gccagcgacgggccgccagcgcggatccggcgggagacgaccgtgggccgggcgatcctg
tcgaacatcctgccgcaggggcttccgttcagcctgatcgatcgcgagctgagcaagaag
gcgatctcccggctgatcaacgcctgctaccggcgtctgggcctgaaggacaccgtggtc
ttcgcggaccagctgatgtatcttggtttccggttctcgacccgtgccggcgtgtcgttc
tgcgccgacgacatggtgattccggacgagaaggccgagatcctgggcgtcgccgaggaa
caggtcaaggagatcgaggaacagtactcgtcgggcctggtcaccaagggcgaacgctac
aacaaggtcgtcgacatctggtcgcactgcaacgaccaggttgcgaaagcgatgatggat
catctcggcaaggaacaggtgaccacgcgcgagggtgagcgggtggcccagtcgtcgttc
aactcgatcttcatgatggccgactccggggcgcgtggttctgccgcgcagatccggcag
ctggccggcatgcgcggactgatggcgaagccggacggctcgatcatcgagacgccgatc
actgcgaacttccgcgaaggcctgaacgtgctgcagtacttcatttcgacgcacggggcg
cgcaagggcctggccgataccgcgctgaagaccgcgaactcgggctacctgacgcgtcgg
ctggtcgacgtgtcgcaggacgtcgtggttaccgaacacgactgcggcaccgagcagggg
ctgctgatgaaggccatcatcgaggggggcgacgtggtcgagccgctgcgcgaccgcgtg
ctcggccgtaccacggcccgcgacatcctcaagccgggcggagacgacgtgctggtggtg
gcgggcgagctgctcgacgaggcgcgggtcgacatgctcgacgaaaatggcgtcgacgaa
gtctgggtccgttccgcgatcacctgcgagacccgccagggcatttgcgccaagtgctac
ggacgtgacctcgcccgcgggcatctggtcaacatcggcgagtcggtcggtgtgattgcg
gcgcaatcgatcggcgaaccgggcacgcagctcacgatgcgcaccttccacatcggcggg
gccgcgagccgtgcggtgaccgtcagcgcgattcaggtcaagaatgccggtcagatccgg
ctgcacaacatcaagaccgtggtcaacaagcacggcaatctggttgcggtttcgcgttcg
ggtgagctcggcgtgatcgacgaggccgggcgcgagcgcgagcgctacaaggtgccttat
ggggcgagcatcagcgtgaaggaaggtgacgcggtcgtggctggccaggaagtggcgatc
tgggatccgcacacgcatccgatcatcaccgaggtcgcggggcgggtgcagctggtcgat
ttcgtcgacaacgtcaccgtgaccaaggagaccgatgagttcaccggcctgtcgtcgaac
gtggtgatggaccacaagagccgcagcgccgccgggcgggatctgcgaccgaccgttcgg
ctgatcgacgaggacgggaacgacctgttcattgcgggaaccgacatgccggcccagtac
ctgttgccggccggtgcgatcttcaacctcgacgacaacgcccgggtggaggttggcgac
gtcatcgcccgtctgccgcaggagtcgtcgaagacccgcgatatcaccggtggtctcccg
cgcgtggcggacctgttcgaggcgcgcaagccgaaggacgcggcggtgctcgcggagatc
tcgggcaccatctccttcggtaaggaaaccaagggcaagcagcgtgtcgtgatcacgccg
gaccggggcgatccacaggagacgctgattccgaagtaccggaacgtcaacgtcttcgaa
ggcgagcgggtcgaacgtggcgaggtgatcgtcgacggcgagctcgatccgcacgacatc
ctgcgtctgcggggtgccaccgtgctggccgagtatcacgtgcaggagatccaggacgtc
taccgcctgcagggcgtgaagatcaatgacaagcacatcgaggtgatcctgcggcagatg
atccgcaaggtcgtgatcactgatcccggcgacacgcgactgctggccggtgaccagatc
gaccgtgcccgcgtgatcgaggagaacgagaagctcgagggcgatcagcgtcccgcgacc
tacgaacgcgtgctgctgggtatcaccaaggcgtcgctggtcaccgagtcgttcatctcc
gcggcctccttccaggagaccacccgggtcctgaccgaggcctcgacccgcggcgcgcgc
gacgaacttcgcggtctgaaggagaacgtgatcgtcggccggctgatccccgccggcacc
gggctggcctatcacaaggagcgccggcgcaagcgccagctcgaactgccgagcttcgac
ctgatgggtagcgaggcggcagcgtcggaggtgaccacgctcccggacaacgggggagaa
ccggggacgtccgccgactag
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