Thioalkalivibrio nitratireducens: TVNIR_3106
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Entry
TVNIR_3106 CDS
T02408
Symbol
pnp_[H]
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVNIR_3106 (pnp_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tni03019
]
TVNIR_3106 (pnp_[H])
03016 Transfer RNA biogenesis [BR:
tni03016
]
TVNIR_3106 (pnp_[H])
Enzymes [BR:
tni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TVNIR_3106 (pnp_[H])
Messenger RNA biogenesis [BR:
tni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TVNIR_3106 (pnp_[H])
Transfer RNA biogenesis [BR:
tni03016
]
Prokaryotic type
tRNA degradation factors
TVNIR_3106 (pnp_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
KH_SLS1_2
KH-I_KHDC4-BBP
KH_PNO1_2nd
OB_RRP5_4th
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AGA34743
UniProt:
L0E0C3
LinkDB
All DBs
Position
complement(3207421..3209505)
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AA seq
694 aa
AA seq
DB search
MSYKKTFQYGNQTVTFETGGIARQASGAVLVNIADTVVLVTVVARKEADPGRDFFPLTVN
YQERTYAAGKIPGGFFKREGRPNEKETLTSRLIDRPLRPLFPEGFKHETQIIATVMSINP
EVDPDIVAMLGASAALAVSGVPFAGPIGAARVGYRDGQYLLNPTASELPDSQLDLVVAGT
ENAVIMVESEASELSEEVMLGAVMYGHEQMQAAIQAIRELAADAGKPAWDWTAPETDDSL
DVRVAEVARNALVEVYQVAEKQARTERLNSLRAGVVEQVATGGDEAPSAEAVKNAFHDLE
YRIVRDRILDGNPRIDGRDTRTVRPITVQTGVLPRAHGSAVFTRGETQALVVATLGTDRD
AQVIDAIEGERRERFMLHYNFPPYCTGETGMVGTPKRREIGHGRLAKRGVQAVMPKDDSF
PYVIRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLIKEADRFAVLADI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIDGITREIMETALQQARDGRLHILERMGEAI
SSHRTEMSSYAPRFITMRINPEKIRDVIGKGGATIRALTEETGTSIDISDDGIVKIASTD
QAAGEEARRRIEELTADVEVGRVYSGRVVKIMDFGAFVSILPGRDGLVHISQISNDRVEN
VTDFLNEGDSVTVKVLEVDKQGRIRLSMKAVDAA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatacaagaagacgtttcagtacggaaatcagacggtcaccttcgagaccggaggc
atcgcccggcaggccagcggagccgtcctggtcaacatcgcggacaccgtggtgctggtc
acggtggtggcgcgcaaggaggccgatccaggtcgcgacttcttcccgctgacggtgaac
taccaggaacggacctacgcggccggcaagatccccggtggcttcttcaagcgcgagggg
cgccccaacgagaaggaaacgctgaccagccgattgatcgaccggccattgcgaccgctg
ttcccggaaggcttcaagcacgagacccagatcatcgcgacagtcatgtcgatcaacccc
gaggtggatccggacatcgtcgcgatgctcggcgcctcggccgcgctcgcggtctcgggc
gtgccgttcgctgggccgatcggcgcggctcgcgtgggctaccgggacggccagtacctc
ctgaaccccaccgcttcggaattgcccgactcgcaactcgacctggtcgtggccggcacc
gagaatgcggtgatcatggtcgaatcggaagcgagcgagctctcggaagaggtgatgctg
ggcgcggtgatgtacggccacgagcagatgcaggcggcgatccaggcgatccgtgaactg
gccgccgacgctggcaagccggcctgggactggaccgcgccggagaccgacgacagcctc
gacgttcgggtcgccgaggtcgcccgtaacgcactggtcgaggtctaccaggtcgccgag
aagcaggcgcggaccgagcgtctgaacagcctgcgtgccggtgtggtggagcaggtcgcc
accggcggcgacgaagcgccttccgccgaggccgtgaagaacgcgttccacgatctggaa
taccggatcgtgcgcgaccggatcctggacggcaacccgcggatcgacggccgcgacacc
cgtaccgtgcgcccgatcaccgtgcagactggggtgcttccgcgcgcccatggctccgcg
gtgttcacccgcggcgagacgcaggcgctggtggttgccaccctgggtaccgaccgcgac
gcccaggtgatcgacgcgatcgagggcgagcgccgcgagcgcttcatgctgcactacaat
tttccgccgtactgcaccggcgagacgggtatggtcgggacgccgaagcggcgcgagatc
gggcacggccgcctcgccaagcgtggcgtgcaggcggtgatgccgaaagacgacagtttc
ccgtacgtgatccgcgtggtctccgaaatcaccgagtccaacggttcgagttccatggcg
tcggtctgcggcaccagcctcgcactgatggatgccggggtacccatgaaggcgccggtt
gcagggattgcgatggggctgatcaaggaagccgaccgcttcgcggtgttggccgacatc
ctcggcgacgaggatcatctgggcgacatggatttcaaggttgcaggcacacgcgatggt
gtgaccgcgctgcagatggatatcaagatcgacgggatcacccgggagatcatggagacg
gcgctacagcaggcgcgcgatgggcgtctgcatatcctcgagcgtatgggcgaggccatc
agctcgcaccgcaccgagatgtcgagctatgctccgcgcttcattaccatgcggatcaac
ccggagaagatccgcgacgtgatcggcaagggtggggcgaccattcgggcgctgaccgag
gaaacgggcacctcgatcgatatctccgatgacggcatcgtgaagatcgcgtcgaccgat
caggccgcgggcgaagaagcgaggcgccgcatcgaggagctgaccgccgatgtcgaggta
ggccgggtctatagcggacgcgtggtgaagatcatggatttcggcgcgttcgtgtcgatt
ctgcccggccgcgacggcttggtgcacatctcccagatctcgaatgatcgcgtggagaac
gtgaccgatttcctgaacgaaggcgactcggtgaccgtgaaggtgctcgaggtcgacaag
cagggccgaatcagactgagcatgaaggccgtcgacgccgcctga
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