Thioalkalivibrio nitratireducens: TVNIR_3210
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Entry
TVNIR_3210 CDS
T02408
Symbol
recQ_[H]
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVNIR_3210 (recQ_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tni03019
]
TVNIR_3210 (recQ_[H])
03400 DNA repair and recombination proteins [BR:
tni03400
]
TVNIR_3210 (recQ_[H])
Enzymes [BR:
tni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TVNIR_3210 (recQ_[H])
Messenger RNA biogenesis [BR:
tni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TVNIR_3210 (recQ_[H])
DNA repair and recombination proteins [BR:
tni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TVNIR_3210 (recQ_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AGA34847
UniProt:
L0E0R9
LinkDB
All DBs
Position
complement(3328206..3330134)
Genome browser
AA seq
642 aa
AA seq
DB search
MWNVDDEPLPESERAVSLTAQAGGDTEPSGAGQRSPDPVRILSEVFGYSGFRGRQREIID
CVAGGGDALVLMPTGGGKSLCYQIPALIRPGCGVVISPLIALMQDQVAALRQSGVRAAAL
NSAESLARNQEAERALLDGRLDLLYIAPERLMLPRTLDLLARARVALFAIDEAHCVSQWG
HDFRPEYIQLSLLAERFPGVPRLALTATADAPTRREIVTRLGLERARQFVSRFDRPNIRY
RISQSDAGGGSARDRLLRFIRQEHPGEAGIVYCLSRKRVEAIADWLAAQGLEALPYHAGL
SVAERDRNQKRFLTGEGVIMVATIAFGMGIDKPNVRFVAHLNLPKSIEAYYQETGRAGRD
GLPADAWMLYGLQDVITLRQMLDQSNADDGHKRVERQKLEAMLGLCELTSCRRQALLAYF
GDDLDSPCGNCDTCLEPPATWDATEPARKALSCVYRTGERFGVNYLIDVLRGRETDRLRA
LGHHHLSTFGIGTELEPAEWRVLFRQLIARGLLRTDLDGHGGLSLDESCRPLLRGETTVE
LRRDQRPARSPRERGSRAARPAADLAPEDQALWDALRACRRRLADAQGVPPYVIFHDVTL
AEMLHEAPVTLDQMAGISGVGISKLDRYGDEFLRVIRGHLGL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacgtggatgatgaaccgttgcctgaatctgagcgcgccgtgagcctcactgcc
caggccggcggcgatacggagccctccggggcggggcaaagatccccggatcccgtgcgg
atcctgtccgaggtcttcggctattccggtttccgcggccgccagcgcgagatcatcgac
tgcgtcgccgggggtggggatgccctggtcctgatgccgaccggcggcggcaagtcgctc
tgctaccagattccggcactgattcgcccgggctgcggggtggtcatctcgccgctgatc
gcactgatgcaggaccaggtggctgccctgaggcaaagtggtgtccgcgcggctgcactg
aattccgcggaatcgctcgcacggaaccaggaggctgaacgggcgctgctcgatggccga
ctcgacctgctgtacatcgccccggagcgcctgatgctgccgcgtacgctggatctgctg
gcgcgtgcgcgggtcgcgctgttcgcgatcgacgaggcacactgcgtgtcacagtggggc
cacgatttccgccccgagtacatccagctctcgctgctggcggagcgctttccgggcgtg
ccgcgcctggcactgaccgccaccgccgatgccccgacgcggcgggagatcgtcacccga
ctggggctggaacgggcccggcagtttgtcagccgtttcgaccgtcccaacattcgctac
cgcatctcgcagtccgatgccggcggcgggagcgcgcgtgaccggctgctgcgtttcatc
cgccaggaacacccgggagaggccgggatcgtctattgcctgagccgcaagcgcgtggag
gcgatcgcagattggctcgcggctcaggggctggaggcgctgccgtatcatgccggcctg
agtgtggcggagcgcgaccgcaaccagaagcggtttctgactggggaaggcgtgatcatg
gtcgccaccatcgccttcggcatgggaatcgacaagcccaacgtccgtttcgtggcccac
ctgaacctgcccaagagcatcgaggcttactaccaggagaccgggcgcgccggacgcgat
ggactgccagcggacgcctggatgctgtatggcctgcaggacgtgatcaccctgcgccag
atgctcgaccaatccaatgcggacgacggccacaagcgcgtcgaacggcagaagctcgag
gcgatgctggggctctgcgaactcaccagctgccggcgccaggcgctgctcgcctatttc
ggcgacgatctcgactcgccctgcgggaactgcgacacctgcctggagccgcccgcgacc
tgggatgccaccgagcccgcgcgcaaggcgctgtcctgcgtctatcgcacgggcgagcgt
ttcggggtgaactacctgatcgacgtcctgcggggccgcgagaccgaccgcctgcgggcg
ttggggcaccatcacctgagtaccttcgggatcggtaccgaactcgagcccgccgagtgg
cgcgtgctgttccggcagctgatcgcgcgcggcctgttgcggacggatctcgatggccac
ggtggactgagcctggacgagtcctgccgtccgctgctgcgcggcgagaccacggtggag
ctgcgccgcgatcagcgtccggcgaggtcaccgcgcgaacgcggcagccgggcggccagg
cccgctgccgacctggcccccgaggatcaggcgctgtgggatgcgttgcgcgcctgccga
cgccgactcgcggatgcccagggcgtgccgccctatgtcatcttccacgacgtgacgctg
gccgagatgctgcacgaggctccagtcacgctggaccagatggcggggatatcgggtgtc
ggcatcagcaagctcgatcgctatggagacgagttcctgagggtcatccggggtcatttg
gggctatag
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