Thioalkalivibrio nitratireducens: TVNIR_3496
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Entry
TVNIR_3496 CDS
T02408
Symbol
rpoD_[H]
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TVNIR_3496 (rpoD_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tni03021
]
TVNIR_3496 (rpoD_[H])
Transcription machinery [BR:
tni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TVNIR_3496 (rpoD_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
GTP_EFTU
Glyco_hydr_30_2
Motif
Other DBs
NCBI-ProteinID:
AGA35131
UniProt:
L0E3B6
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All DBs
Position
3619800..3621665
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AA seq
621 aa
AA seq
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MNREEQQSQLKELIARGKEQGYLTYTEVNDHLPDSIIDSDQIEDIIAMINDMGIAVHEQA
PDADTLLLSDGSVSSDEDAEDAVAALAAVDSDFGRTTDPVRMYMREMGTVELLTREGEIR
IAKRIEEGLMQVLFALAHHPSAISQLLEQYQRLIENNTRLTDLVVSFISPEAGDGEAVAR
GLAEPGTATESPPTATAQTSDEDSDDSDADDSDEEVEDTGPDPEEARVRFARLAELHNAA
QEACQRKDYEAYARAREETARYFMEFKLVPRVVDELTSNLHATIAQIRRYERQIMQLVVA
QARMPRKTFLDSFPKNETNLDWIEQAQKGKGKYTEQLAEVADEVVRLQKKLLEIEKQANL
SIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQE
MGREATPEELAERMEMPEDKIRKVMKISKEPISMETPIGDDEDSHLGDFIEDEKVMTPVE
SAARAKLSEATREILATLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPTRAELLRTYMDIE
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgggaagaacaacagtcacagctcaaagagctcattgccaggggcaaggagcag
ggctacctgacgtacaccgaggtgaacgaccaccttccggactcgatcatcgactccgac
cagatcgaagacatcatcgcgatgatcaacgacatgggcatcgcggtgcacgaacaggcc
cccgacgcagacaccctgctgctctccgatggcagcgtctcctcggacgaggatgccgag
gacgcggtagccgcgctcgcggccgtggacagcgatttcggccgcaccacggacccagtg
cgcatgtacatgcgcgagatgggcacagtagaactgctgacccgagagggcgaaatccgc
attgccaagcggatcgaggagggcctgatgcaggttctgttcgcgctcgcgcatcatccg
agtgcgatcagccagctgctggagcagtaccagcgcctgatcgagaacaacacccgcctg
acggatctggtcgtatccttcatcagcccggaagcgggagatggagaggcggttgcgcgt
ggattggccgaaccaggcacggcgaccgagagtccacccaccgccacggcgcaaaccagc
gacgaagactcggacgactccgacgcggacgactccgacgaggaagtcgaggacacgggg
ccggatcccgaagaagcgcgcgtgcgcttcgcgcggctggcggaactgcacaacgccgca
caggaggcgtgccagcgcaaggattacgaagcgtatgcccgggcacgcgaggaaaccgcg
cgctacttcatggagttcaagctggtgccgcgggtggtcgatgaactgacgtcgaacctc
cacgcgaccattgcccagatccggcgctacgagcggcagatcatgcaactggtcgttgcg
caggcacgcatgccacgcaaaacctttctcgactcgttcccgaagaacgaaaccaacctc
gactggatcgaacaggcacagaagggcaaggggaagtataccgagcagttggccgaggtg
gccgacgaggtcgtgcgcctgcagaagaagctgctcgagatcgagaagcaggcgaacctc
agcatcgccgagatcaaggacatcaaccgccggatgtcgatcggcgaggccaaggcgcga
cgcgcgaagaaggagatggtcgaagccaacctgcgcctggtcatctcgattgcgaagaaa
tacaccaaccgcggcctgcagttcctggacctgatccaggagggcaacatcggcctgatg
aaagcggtggacaagttcgaataccggcgcggctacaagttctcgacctacgcgacctgg
tggatccggcaggcgattacccgctcgatcgcggaccaggcgcgcaccatacggatcccg
gtgcacatgatcgagaccatcaacaagctgaaccgcgtctcccggcagatgctgcaggag
atgggacgcgaggcaacccccgaggaactcgccgagcgcatggaaatgcccgaggacaaa
atccgcaaggtgatgaagatctccaaggaaccgatctcgatggagacgccgattggcgac
gacgaggattcgcatctgggcgacttcatcgaggacgagaaggtgatgaccccggtcgaa
tcggcggcccgcgcgaagctctccgaggcaacacgcgagatcctggccacgctgaccccg
cgcgaagccaaggtactgcgcatgcgcttcggcatcgacatgaacaccgaccacacgctg
gaagaggtcggcaagcagttcgatgtgacccgcgagcgcatccggcagatcgaggcaaag
gccctgcgcaaactgcgccacccgacccgcgcggagctactacgcacctacatggacatc
gagtaa
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