Thioalkalivibrio nitratireducens: TVNIR_3605
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Entry
TVNIR_3605 CDS
T02408
Symbol
rho_[H]
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVNIR_3605 (rho_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tni03021
]
TVNIR_3605 (rho_[H])
03019 Messenger RNA biogenesis [BR:
tni03019
]
TVNIR_3605 (rho_[H])
Transcription machinery [BR:
tni03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TVNIR_3605 (rho_[H])
Messenger RNA biogenesis [BR:
tni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TVNIR_3605 (rho_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGA35235
UniProt:
L0E201
LinkDB
All DBs
Position
complement(3742306..3743565)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKTAAELVAFAESQGIDNMSRARKQDIIFSLLKAHAKNGEPIFGDGVLEILSD
GFGFLRGADSSYLAGPDDVYVSPSQIRRFGLRTGDTISGKIRPPKDNERYFALLKVSEIN
FEPPENARHKVLFENLTPLHPNARMRMERGNGSTEDITARVIDMVAPFGKGQRGLIVSPP
KAGKTLMLQNIAQSIATNYPDCYLIVLLIDERPEEVTEMTRMVQGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEIHLDRRIAEKRVYPAINV
NRSGTRREELLTEPDELQKLWILRKFLHGMDDLEAMEFLLGRMQSSKTNADFFDMMRRA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgaccgaactgaagcagaagactgctgccgaactcgtggcctttgccgagtcc
cagggcatcgacaacatgtcccgggcgcgaaaacaggacatcatcttttccttgctgaag
gctcacgcaaagaacggcgagccgatctttggtgatggggtgctggagatcctgtccgac
ggcttcggattcctgcgcggcgcggacagctcttacctggcgggtccggacgatgtctac
gtatcgcccagccagatccggcgcttcgggctgcgtaccggagataccatctcgggcaag
attcgcccgccgaaggacaacgagcgctatttcgcgctgctgaaggtctccgaaatcaac
ttcgagccgccggagaatgcacggcacaaggtgctgttcgagaacctgaccccgctgcac
ccgaacgcgcgcatgcgcatggagcgcggcaacggctccaccgaggatatcaccgcccgc
gtgatcgatatggtggcaccgttcggcaagggccagcgcgggctgatcgtgtcgccgccg
aaggccggcaagacgctgatgctgcagaacatcgcgcagagcatcgcgaccaactacccg
gactgctacctgatcgtgcttctgatcgacgagcgcccggaagaggtcaccgagatgacg
cggatggtgcagggcgaggttgtttccagtaccttcgacgagccggccacccgccacgtg
caggtcgccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagcgcgatgtg
gtcatcctgctcgactcgatcacgcgtctggcgcgcgcgtacaacaccgtggtgcccagc
tcgggcaaggtgctgacgggtggcgtcgatgccaatgccctgcaccgcccgaagcgcttt
ttcggcgccgctcgcaacatcgaggaggggggcagcctgaccatcctcgcgaccgcgctg
gtggacacgggctccaagatggacgaggtgatctacgaggagttcaagggcaccggtaac
atggagatccacctggatcgacgcatcgccgagaaacgggtctacccggcgatcaatgtg
aaccgctccggtacccgccgcgaggaactgttgaccgaacccgacgagctccagaaactg
tggatcctgcgcaagtttctgcacggcatggacgacctcgaggcgatggagttcctgctc
ggacgcatgcagtccagcaagaccaacgccgacttcttcgacatgatgcggcgcgcctga
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