Thioalkalivibrio nitratireducens: TVNIR_3607
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Entry
TVNIR_3607 CDS
T02408
Symbol
rhlB_[H]
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVNIR_3607 (rhlB_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tni03019
]
TVNIR_3607 (rhlB_[H])
Enzymes [BR:
tni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TVNIR_3607 (rhlB_[H])
Messenger RNA biogenesis [BR:
tni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TVNIR_3607 (rhlB_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGA35237
UniProt:
L0E1W5
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All DBs
Position
3744177..3745550
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AA seq
457 aa
AA seq
DB search
MNSSEPAVSAPGKSMTDTTPERSRCADLDLPEAVLQGIRKAGFEYCTPIQALTLPIALAG
HDVAGQAQTGTGKTAAFLLAAFNRLLRHPPPPDRRRDDVRMLVLAPTRELAIQIHKDALL
LGAHTDLKFALAYGGTGYEQQREQLQAGADVLIGTPGRIIDYHKQRVFGLKRTEVVVLDE
ADRMFDLGFIKDIRYLLRRCSPPTQRQSMLFSATLSWRVMELAYEHMNNPEKVQAQAETV
TADRIRQVIYYPANEQKIPLLIGLARKLQPERAIVFVNTKHWAERVCDWLNANELKAALL
SGDVPQTKRSRLLSQFAEGKYRYLVATDVAARGLHIPDVTHIFNFDLPQAGEDYVHRIGR
TARAGAEGDAISFGCEDSAFYLPDIEAYLGRRIPTEMLYPEDLPADLKRPPPRARRKPDE
RRGRAPRGSAREGGRTPDRGPGRPGGGRRPRRPAPSS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
gtgaattcaagtgaaccggcagtttctgcccctggaaaatccatgaccgatacgaccccg
gagcgcagccgctgcgccgatctcgatctgcccgaagcggtcctgcagggcatccggaaa
gccggcttcgaatactgcacgccaatccaggcgctgaccctgccgatcgcgctggcgggc
cacgacgtcgccggccaggcccagaccggcaccggcaagacggcggcgttcctgctggcg
gcgttcaaccggctattgcgacatcccccgccgccggaccggcgccgcgacgatgtgcgc
atgctggtgctggcaccgacacgggagctggcgatccagatccataaggacgccctgctg
ctgggcgcccacaccgacttgaagttcgcgctcgcctacggcggcactggctatgaacag
cagcgcgaacaactgcaggcgggggccgacgtgctgatcggaacgcccggccgcatcatc
gactaccacaagcagcgcgtgttcggcctgaaacgcaccgaggtggtggtgctcgacgaa
gcagaccgcatgttcgacctcggcttcatcaaggacattcgctacctgctgcggcgctgc
tcgccaccaacccagcgccagtcgatgctgttctcggccacgctgtcctggcgggtgatg
gagctggcttacgagcacatgaacaacccggaaaaggttcaggcgcaggcggagaccgtg
accgcggaccggatccgccaggtcatctactacccggccaacgagcagaagattccgttg
ctgatcggccttgcccgcaagctgcagcccgagcgcgcgatcgtgttcgtgaacaccaag
cactgggccgagcgtgtctgcgactggctgaacgccaacgaactgaaagccgccctgctc
tcgggcgacgtgccgcagaccaagcgcagccgactgctgtcccagttcgccgaaggcaag
taccgctatctcgtcgcgaccgatgtcgccgcccgcggcctgcacatccccgacgtgacc
cacatcttcaacttcgatctcccgcaagcgggcgaggactacgtgcaccgcatcggccgc
accgcccgcgccggcgcggaaggtgacgccatcagcttcggctgcgaagattccgcgttt
tatctgcccgacatcgaggcctacctaggccgccgcatcccgaccgaaatgctctacccc
gaggatcttccggcggatttgaagcgcccccctccgcgcgcacggcgcaaacccgacgaa
cgccgggggcgggcgccgcgtggcagcgcccgggagggcggcagaacgccagaccgcgga
ccgggcaggcccggtggaggccgccggccgcgccgccctgcccccagctcctga
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