Thioalkalivibrio nitratireducens: TVNIR_3785
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Entry
TVNIR_3785 CDS
T02408
Symbol
uvrD_[H]
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03420
Nucleotide excision repair
tni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TVNIR_3785 (uvrD_[H])
03430 Mismatch repair
TVNIR_3785 (uvrD_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tni03400
]
TVNIR_3785 (uvrD_[H])
Enzymes [BR:
tni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TVNIR_3785 (uvrD_[H])
DNA repair and recombination proteins [BR:
tni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TVNIR_3785 (uvrD_[H])
MMR (mismatch excision repair)
Other MMR factors
TVNIR_3785 (uvrD_[H])
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGA35411
UniProt:
L0E429
LinkDB
All DBs
Position
3922528..3924711
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AA seq
727 aa
AA seq
DB search
MDVSRLLDSLNPAQREAVAAPLGPTLVLAGAGSGKTRVLVHRIAWLIEVEGVAPWSLLSV
TFTNKAANEMRGRIETLLDQPVSGLWVGTFHGLAHRLLRQHWQEAKLPQSFQILDSDDQL
RLVRRVLRALEMDEARWPPRQAQWFINARKDEGRRPEHLPDTGDPVSRQWVRVYSAYEQA
CARAGVVDFAELLLRSLELLRDNEELLEHYRHRFRHLLVDEFQDTNDIQYGWLRLLAGGR
SPVFAVGDDDQSIYGWRGARVENLQHFQKDFPGTQVVRLEQNYRSSANILNAANALIRNN
QGRLGKELWTDGQAGAPVRLFAAINEQDEARFVAETIARHVEHGGLHRECAVLYRSNAQS
RVIEDTLFARRIPYRVYGGLRFFERLEIKDALAYLRLVENADDDAAFLRAVNQPPRGIGE
KTLEDLRLRAQQQGLSLIQAGQQAVASEAMPGRARNAVAGFLQLVLRLREEISGKELPDQ
IESAIARSGLREHFANEKGERGQARVENLDELVGAARAFAQDLPVDAETGTLTDFLAHAA
LEAGEGAADPHEDAVQLMTLHSAKGLEFPLVFLTGLEEGLFPNARSLEEPGRLEEERRLA
YVGMTRAQRELYLTHAETRRLYGRESYNMPSRFIGELPAEMVEPLRPQARGPSAGRFAGI
RSGQGARQAAAADAGLAIGSRVRHAKFGEGVITEYEGGGASARVQVHFADVGAKWLVLSF
ARLDPVA
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttcccgtctgctcgattccctgaacccggcccagcgcgaggccgttgccgcc
cctctcggcccgaccctggttctcgcgggggccggcagcggcaagacgcgcgtattggtg
catcgcatcgcctggctgatcgaggtcgaaggcgtggcaccgtggagcctgctctcggtg
accttcaccaacaaggccgcgaacgagatgcgcgggcgcatcgagaccctgctcgaccag
ccggtcagcgggctctgggtgggtacgttccacggcctcgcccaccggctgttgcgccaa
cactggcaggaggcaaagctgccgcagtcgttccagatccttgacagcgacgatcagctg
cgcctggttcgccgcgtgctgcgcgcgctggaaatggacgaggcacgctggccgccgcgc
caggcgcagtggttcatcaatgcgcgcaaggacgagggtcgccgccccgaacacctgccc
gatactggggacccggtgtcacgccagtgggtacgcgtctactccgcctacgagcaggct
tgcgcgcgggccggggtggtcgacttcgccgaactgctgctgcgctcgctcgaactgctg
cgcgacaacgaagaactgctcgagcactaccgacaccggttcaggcacctgctggtcgac
gaattccaggacaccaacgacatccagtacggctggctgcggctgctggcaggcggcaga
tccccggtgttcgcggtcggcgacgacgaccagtcgatctacggctggcgcggcgcgcgc
gtcgagaacctgcagcatttccagaaggactttcccggaacccaggtggtgcggctggaa
cagaactaccgctccagcgccaacatcctgaatgcggccaacgcgctgatccgcaacaac
caaggacggctcggcaaggaattgtggaccgacggacaggccggcgctccggtacggctg
ttcgcggcgatcaacgaacaggacgaggcgcgcttcgtcgccgagacgatcgcacgccac
gtcgaacacggcggcctgcaccgcgaatgcgcggtgctgtaccgttccaacgcgcagtcg
cgggtgatcgaggacacgctgttcgcccggcgcattccgtaccgggtctatggcggcctt
cgcttcttcgagcggctcgagatcaaggatgcactggcctacctgcgcctggtcgagaac
gccgacgacgatgccgcgttcctgcgagcggtgaaccagccgccgcgcggaatcggcgag
aagacgctggaggatctgcgcctgcgggcccagcagcaggggctcagcctgatccaggct
gggcaacaggcggtggcctcggaagccatgccggggcgcgcgcgcaatgcggtcgccggc
ttcctgcagctcgtgctgcggctgcgcgaggagatatccggaaaggagctgccggaccag
atcgagtcggcgatcgcccgctcgggcctgcgcgagcatttcgcgaacgagaagggcgag
cgcggccaggctcgcgtcgagaacctcgacgaactcgtcggcgccgcgcgggccttcgcc
caggatctgccggtagatgctgaaaccggcacgctgaccgatttcctcgcgcatgccgcg
ctcgaggccggcgagggtgccgccgacccacacgaggatgcggtgcagctgatgacgctg
cattccgcaaaggggctggaattcccgctggtgttcctgaccggcctcgaggagggcctg
ttcccgaacgcccgctcgctcgaggaaccgggccggctggaggaagaacgccggctcgcc
tatgttggcatgacccgcgcgcagcgggaactgtacctgacccatgccgagacgcggcgc
ctgtacgggcgcgagtcctacaacatgccatcgcgtttcatcggcgaactgcccgcggag
atggtcgaaccgctgcggccgcaggcacgcggcccgtcggcaggacgcttcgccggcatt
cgctcggggcagggtgcgcgccaggccgcggccgccgacgcgggcctcgcgatcggcagc
cgggtccgccacgcgaagttcggcgaaggtgtgatcaccgagtacgagggcggcggtgcc
tccgcccgggtccaggtgcacttcgccgatgtcggcgcgaagtggctggtgctcagcttc
gctcggctcgatcccgtggcctga
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