Trichoplusia ni (cabbage looper): 113491723
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Entry
113491723 CDS
T05757
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113491723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113491723
Enzymes [BR:
tnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113491723
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113491723
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
113491723
NCBI-ProteinID:
XP_026724654
UniProt:
A0A7E5V8N3
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Position
3:7739035..7752898
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AA seq
528 aa
AA seq
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MEVTRKNFIEELENVKRDLSKCCFVGFDAEFTALLTGECFKHRLFDTSEDRYNKIKNEVS
NMIMTQVGLTMFEYDRDTDSYTATGYTFHLCPQVVADIDQSFIFQASTLNFLCQHKFDFN
KFTYEGLPYLSKVEAVKVQTYLENGLLLKDHARTLSMDEERQLQQYCSQVSKWLIQNEED
TIYLDVESPVLRYLTHMEIRSRFPKVLTTDSLGNSKKVLVYRHESVAGANNAPESQLQEN
LMKHLLGFSQVIALLETSKKPIVGHNIFLDTILLHNQFIGPLPQEYTKFKQNIHKTFPFL
FDTKYISYEMSRKLSYREVWKSNNLQDLYEFFSEGKCKQLRKGVNHIKLSREFKDNQTYH
EAGWDSYCSGYCFVRLGHWIASENRGSYTTVGPTETLTALAPYCNKINVIRGAITYMSFA
ENDPPRHRPPLLHVKALAQRTINIGQVASALAGFGNIDVKPHGRRTALVAAVTHQTVENI
LKNFRHSKEYRISKYSVYRHSAAGTVVVWSGALITGSLMLYFLHKQLK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaagttacaagaaaaaactttattgaagaattggaaaatgtaaaacgagatttatca
aaatgttgttttgttggttttgacgctgaatttactgcccttctcactggagagtgcttt
aaacacagattatttgacacaagtgaagacagatacaataaaatcaagaacgaagtgagc
aacatgataatgacacaagtcggcctcaccatgttcgagtatgatagagacacggactca
tacacagccaccggatacacattccatctgtgtccacaagtagttgcagatattgatcag
tcatttatattccaagcctctacacttaactttctctgccagcataagtttgattttaat
aagtttacttatgaagggcttccttatctaagtaaagtagaagcagtcaaagtccaaaca
tatcttgaaaatggcctattactcaaagatcatgcaagaacattatcaatggatgaggaa
agacagctgcaacagtactgctctcaagtttctaaatggctgatacaaaatgaggaagac
acaatatacttggacgtggagagccctgtcctgcgatacctcactcacatggagatcagg
tcgcggttcccgaaggtcctcactacggatagtttaggtaatagtaagaaggtgcttgtg
tacagacatgaatcagtcgcaggcgcaaacaacgctccagaatcacaactacaagaaaat
ctaatgaaacatctcctaggattctcacaagtgatagcattgcttgaaacttcgaagaag
ccaattgttggccacaatatattccttgacaccatactactacacaatcagtttatcgga
ccactaccacaagaatacacaaagttcaagcaaaacattcacaaaacgtttcccttccta
tttgacaccaaatacatatcctacgagatgtctagaaaactcagttaccgtgaagtttgg
aagtcgaacaacttacaagatttgtatgaatttttctcggaaggcaaatgtaagcagtta
cggaaaggagtcaatcatataaagctgagccgagaattcaaagacaatcagacctaccat
gaggcgggatgggattcgtattgttcagggtactgcttcgtccggctggggcactggatc
gccagcgagaaccgcggcagctacacaaccgtcgggcccactgagacgctgacagcctta
gcgccatactgtaacaagatcaacgtcatacgaggcgctattacttatatgagtttcgcg
gaaaacgatccgccgcggcatcggccgccgttgctgcacgtcaaggcgcttgcgcagcgg
accatcaacattggacaggtggcttcggcgctcgcgggcttcggtaatatagatgtgaag
cctcacggacgacgaactgccctcgttgccgctgttacacaccaaaccgttgaaaacatt
ctcaagaacttcaggcatagtaaagaatacaggatatcaaagtacagcgtgtacaggcac
tcggcggcagggactgtggtggtctggagcggtgccctcatcactggcagtttaatgctg
tatttcctacacaaacagttaaaataa
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