Trichoplusia ni (cabbage looper): 113491996
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Entry
113491996 CDS
T05757
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113491996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113491996
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113491996
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113491996
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
113491996
NCBI-ProteinID:
XP_026725054
UniProt:
A0A7E5V9U4
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Position
1:6114133..6133426
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AA seq
1069 aa
AA seq
DB search
MAATRKLQGEIDRCLKKVTEGVETFDDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRD
QIKSWIASGEIKDKSTLLEYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKE
REEMSSWLVSSIDALNLQVDQFESEVESLLVGKKKRLDKEKQDRMEELKSKLEKHRFHIK
KLETLLRMLDNMSVEVEQIKRIKDDVEYYIDSSMEPGFEENEYIYDDIRGLDEIELSGVG
LPSSATTDSNNSNDSAGSPTSMLSGTSPITSPTLDVHNHSTDSIDVEKKKKEDIIAKVCD
LSFSPTIHTTLPVKPLPLRAVNASAVSNSTCNVSSLLNNSAASTNSVSSPAAASGASTPS
KLPAPADPPALHAHKPNNTEVVENGPVSTTPAHTATHLPPAPALPPPTSKSSSVPLGSSA
SASETAASPLTVNGPSQPAHHTPQHQPNNGRAAGGGAGTASLKSMAQEAVQRAGLAHAHP
QVHINCYTSARAWRRRPCSARGSRTHTHRYTSTVIHLQEHGAGGRAARGARARTPTGTHQ
LLYICKSMAQEAVQRAGLAHAHPQVHINCYTSARAWRRRPCSARGSRTHTHRYTSTVIHL
QEHGAGGRAARGARARTPTGTHQLLYICKSMAQEAVQRAGLAHAHPQVHINCYTSARAWR
RRPCSARGSRTHTHRYTSTVIHLQEHGAGGRAARGARARTPTGTHQLLYICKSMAQEAVQ
RAGLAHAHPQVHINCYTSARAWRRRPCSARGSRTHTHRYTSTVIHLQEHGAGGRAARGAR
ARTPTGTHQLLYICKSMAQEAVQRAGLAHAHPQVHINCYTSARAWRRRPCSARGSRTHTH
RYTSTVIHLQEHGAGGRAARGARARTPTGTHQLLYICKSMAQEAVQRAGLAHAHPQNLRR
GAPIAQAHIPPLLGVAPLGPLPLNSDHQLQFQMLESSFYHMPHPSDSERSRTYLPRNICP
TPLYYNQVVLPHSDSVDFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMM
WFQRHEEPKVINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgacaaggaaattacaaggtgaaatagacaggtgtttaaaaaaggtaacggag
ggtgtggagacgttcgatgacatctggcagaaggtacacaatgcgacgaacagtaaccaa
aaagagaagtatgaggcagacctcaagaaggagatcaagaagcttcagaggctacgggat
cagatcaagtcgtggatcgcctccggggagattaaggataagagtacacttttagaatat
aggaaactaatagaaacacaaatggaaaggttcaaagtagtggagcgggagacgaaaacg
aaggcgtactcgaaggagggcctcggcgcggcgcagaagctggaccccgcgcagaaggag
cgtgaggaaatgtcttcatggctagtctcctccatcgacgcacttaatttacaagttgat
caatttgagtctgaagtagagtcacttctagtgggtaagaagaaaaggttggacaaggag
aaacaagaccgtatggaggagctaaaatctaagctggaaaagcacaggttccacataaag
aagttagagacactgctaagaatgcttgacaatatgtcagttgaagttgaacagataaaa
aggataaaagacgacgtagagtactacatagactcgtcaatggagccgggcttcgaggag
aacgagtacatatacgacgacatccgcggcctcgacgagatcgagctcagcggcgtgggc
ctgccctcctccgccaccaccgacagcaacaacagcaacgactctgctggctcacccact
agtatgctctcaggtacaagtccaataacatcaccaacgttagacgtacataatcactca
acagactccatagacgtcgaaaagaagaaaaaagaagacatcatagcgaaagtgtgcgat
ttgtctttttcaccgacgattcatacgacattgccggtaaaaccactgccgctgcgcgcg
gtgaacgcgagcgcggtcagtaacagcacgtgtaacgttagttccttgctcaataactcc
gcagcatccaccaatagcgtcagcagccccgccgccgcctcgggcgcctccacgcccagc
aagctgcccgcgcccgccgacccgcccgcactacacgcgcacaagcctaacaacaccgaa
gtagtggagaatggtccggtgtcgactacacccgcgcatacggcaacacatctaccgccc
gcgcctgcgcttcccccgccaacgtcgaagagttcgtccgtgccgctcgggtcgagcgcg
agcgcgagcgagacggcggcgtcgcccctcaccgtgaacgggcccagccagcccgcgcat
cacacgccgcaacaccaacccaacaacgggcgcgcggcgggcggcggcgcgggcacggcg
tcgctcaagagcatggcgcaggaggccgtgcagcgcgcggggctcgcgcacgcacaccca
caggtacacatcaactgttatacatctgcaagagcatggcgcaggaggccgtgcagcgcg
cggggctcgcgcacgcacacccacaggtacacatcaactgttatacatctgcaagagcat
ggcgcaggaggccgtgcagcgcgcggggctcgcgcacgcacacccacaggtacacatcaa
ctgttatacatctgcaagagcatggcgcaggaggccgtgcagcgcgcggggctcgcgcac
gcacacccacaggtacacatcaactgttatacatctgcaagagcatggcgcaggaggccg
tgcagcgcgcggggctcgcgcacgcacacccacaggtacacatcaactgttatacatctg
caagagcatggcgcaggaggccgtgcagcgcgcggggctcgcgcacgcacacccacaggt
acacatcaactgttatacatctgcaagagcatggcgcaggaggccgtgcagcgcgcgggg
ctcgcgcacgcacacccacaggtacacatcaactgttatacatctgcaagagcatggcgc
aggaggccgtgcagcgcgcggggctcgcgcacgcacacccacaggtacacatcaactgtt
atacatctgcaagagcatggcgcaggaggccgtgcagcgcgcggggctcgcgcacgcaca
cccacaggtacacatcaactgttatacatctgcaagagcatggcgcaggaggccgtgcag
cgcgcggggctcgcgcacgcacacccacaggtacacatcaactgttatacatctgcaaga
gcatggcgcaggaggccgtgcagcgcgcggggctcgcgcacgcacacccacaggtacaca
tcaactgttatacatctgcaagagcatggcgcaggaggccgtgcagcgcgcggggctcgc
gcacgcacacccacaggtacacatcaactgttatacatctgcaagagcatggcgcaggag
gccgtgcagcgcgcggggctcgcgcacgcacacccacaggtacacatcaactgttataca
tctgcaagagcatggcgcaggaggccgtgcagcgcgcggggctcgcgcacgcacacccac
aggtacacatcaactgttatacatctgcaagagcatggcgcaggaggccgtgcagcgcgc
ggggctcgcgcacgcacacccacaggtacacatcaactgttatacatctgcaagagcatg
gcgcaggaggccgtgcagcgcgcggggctcgcgcacgcacacccacagaacctaagacga
ggagcacctatagcgcaagcgcacattccgcctttattgggtgtcgcaccactagggcca
ctaccacttaactctgaccaccagctacaattccagatgttggaatcgtcgttctaccat
atgccgcacccgtcagattcagagagatcgcggacatacctaccaagaaatatatgcccg
acccccctatattacaaccaggtggtgttgccgcactcggactcggtggacttcttccag
cgcctgtccacggagacgctattcttcatattctactacatggagggcacgaaggcgcag
tacctcgccgccaaggcgctcaagaagcagagctggcgcttccataccaagtacatgatg
tggttccagaggcacgaggagcccaaggtcatcaacgaggagtatgaacaggggacgtat
atctactttgactacgagaagtggggccagcggaagaaggagggcttcacgttcgagtat
aagtacttagaggaccgggacttgaactga
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