Trichoplusia ni (cabbage looper): 113492176
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Entry
113492176 CDS
T05757
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113492176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113492176
Enzymes [BR:
tnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113492176
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113492176
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_1
Motif
Other DBs
NCBI-GeneID:
113492176
NCBI-ProteinID:
XP_026725326
UniProt:
A0A7E5VAL8
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Position
3:16595955..16617713
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AA seq
656 aa
AA seq
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MEVVRKNFKEAMPLIEESINKADFFSIDTEFTGLINGRDVSMFDTPGDYYTRLLSGSAEF
MLIQFGLCAFYWDKEKKQYMNDAYNFFLFPRARPGPDRMFLCQSSSLDFLAANGFDFNKL
IREGISYLPEPVETRLRETLQERQSTYSREKDSIRIPEENKPHVEEVCKRVATFIKESKE
DEMEIDKCNAFVRLLLFQELRNRFKDDIIVDTKVLENKTRVLKVIRRTEDMGDPEAIRKQ
REWDDLEEAVGFSKVARMISASRKLVVGHNMLLDILHTLGHFFQQPPYDYALFKEFVTCM
FPKLLDTKYMSSSPPFKDKLSSSVLNELLTSLSQKPFSLPKVGSLEGRGYSQLDDKQHEA
GYDAYMTGLCFLAMLAHRRGRHARCDDSLPALQPYLNKLFLAKTARQDSPYINLVGDDPT
PPRDHVFHMIFPKDWQRSDINQLFSPFGAITVQFIDEISAFVALDRRDQAADVLRVLAGN
TRVQLTPFEKHRRCSSSESEMAPQRSDWPKADTYKLMKTTSDAKSRQVVNNRPVVSNLPA
APQLPQKVSRVSSAPVTPPPAPGVAKKRSSSGVFEVDELEPVAKKIDVKTPQKQSKVVNG
GQQEASSKSKHNKTDKKSQSDDKTKPKDEKIKIVEKFDSEAKSNCVSAFKESDLWD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgttcgaaagaattttaaagaggcgatgcctttaatagaagagtcgataaat
aaagctgactttttctcaattgatacagagtttacagggctcataaacgggcgagatgta
tctatgtttgatacgcctggggactattatactcgtttgttgagtggctctgctgagttt
atgctgatacagtttgggctgtgtgcattttattgggataaagaaaagaagcagtacatg
aatgacgcgtacaatttctttctattcccgcgcgcgcgtcctgggccagacagaatgttt
ctgtgccaaagttccagcttggatttcttggcggcaaatggatttgacttcaacaagctg
atacgagaaggcatctcatacttacctgaaccagtagaaacaaggctcagagaaacttta
caggaaagacaatcaacatactctcgggagaaagattctataaggatacctgaagaaaac
aaaccgcatgtagaagaagtatgtaagagagtggcaacattcattaaagaaagcaaagag
gatgaaatggagattgacaaatgcaatgcctttgtaagactgctgctgtttcaagagctg
cgaaacagattcaaggatgacattatagttgatactaaggttttagaaaataagaccaga
gtgttaaaagtgatacgaagaacagaagatatgggagacccagaggctattaggaaacag
cgggagtgggatgaccttgaagaggctgtgggcttttccaaagtggcacggatgatcagc
gcttctaggaagttggtagtcggtcacaacatgttgctggacatcctgcacactctcgga
catttcttccagcagccaccttatgattacgcattattcaaggagttcgtaacctgcatg
tttcccaagttattagacacgaaatacatgtcgagctcaccgccgtttaaagacaagctt
tcgtcaagtgtgctcaatgaactcttaacgagtttaagccaaaagcctttctcactacca
aaagtcgggtctctggagggtcgcggctacagccagctggacgacaagcagcacgaggcg
ggctacgacgcgtacatgacggggctgtgcttcctggccatgctggcgcaccgccgcggc
cggcacgcgcgctgcgacgactcgctgcccgccctgcagccctacctcaacaagctgttc
ctagccaagactgcccgacaagacagcccttatatcaaccttgttggtgatgaccctaca
ccacctcgagaccacgttttccacatgattttccctaaagattggcagaggagtgacatc
aaccaactgttcagtccttttggtgcgataacagtgcaattcatcgacgaaatatccgcg
ttcgttgcgttggaccgccgcgatcaagccgctgacgtgttacgcgtactcgccggcaac
acgcgcgtccaactcactcccttcgagaaacacagaagatgcagcagcagtgagagcgag
atggcgcctcaacggagcgactggcccaaagcggatacgtataaactaatgaaaacgacg
tctgatgcgaagtcacggcaagttgtgaacaaccgtcccgttgtgagcaacttacccgcg
gcgccgcagctgccgcagaaagtgagtcgcgtgagcagcgcccccgtcacccctccccca
gcgcccggcgtcgccaagaagaggtcgtcgtcgggagtgtttgaagttgatgaattagaa
cctgtagcaaagaagattgatgtgaaaaccccacaaaagcagtctaaagtcgtaaacgga
ggtcagcaggaggcctcgagcaaaagtaaacacaataaaactgacaaaaaatctcaaagt
gacgacaaaactaaacctaaggacgaaaaaattaaaatagtcgaaaagttcgatagcgaa
gctaagtcgaactgcgtgtccgctttcaaggaaagcgatttgtgggactga
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