Trichoplusia ni (cabbage looper): 113492478
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Entry
113492478 CDS
T05757
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113492478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113492478
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113492478
U7-dependent histone pre-mRNA processing factors
113492478
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
FAM219A
Motif
Other DBs
NCBI-GeneID:
113492478
NCBI-ProteinID:
XP_026725741
UniProt:
A0A7E5VBS3
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Position
4:1732739..1739754
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AA seq
735 aa
AA seq
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MTSIIKLHCLSGAGDETPPCYVLQIDEFKFLLDCGWDEKFDMEFIKELKRHINTIDAVLI
SHSDPVHLGALPYAVGKLGLNCPIYATLPVYKMGQMFMYDLYQAHRNVSEFDLFTLDDVD
AAFDRIVQLKYNQSIDMKGKGLGLRITPLPAGHSLGGTVWRIAAPGEEDIVYAPDFNHKK
ERHLNGCEIERLMRPSLMLLGAMNADYVQQRRRLRDEKLMTTILSTLRGGGCVLVCTDTA
GRVLELAHMLDQLWRNKDSGLVAYSLLLLSNVSYNVVEFAKSQIEWMSDKLTRAFEGARS
NPFALRHLQLCHSVGEVSRTPGPKVVLASFPDLESGFARDLFLLWAPNPQNSIVLTARTS
PGTLARDLIEKGGDRTLELTVRRRVRLEGAELEEFMQNQRVKVNNTVNMVGSREESGGIS
SDSDSDGELEMWVVTGKHDIPVRHDVRAAGCFKSNKRHHAMYPFHEERTRADDYGEMIKP
EDYRLAEIVDAEGEIRDVPPAPIPKQEPEEEMTEIPSKCISSTRQVQIKANIQYIELEGR
CDGESLLRVVTQAKPRAIVGLRAHRGALQTLKKHCEAEGIEKIYIPSAGEVIDATTESHI
YQVKLTDSLMSGLAWRSAGDAELAWLSAQLVPRASQRENATAIEEATSDVSMSLEAQAAG
GAHAASFVNALRLSELRAALHRLGLSSEFSGGALECCNGTLAIRRLENGRVALEGVLSEE
YYKVRELLYEQFAIV
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgattatcaagctccactgcctctcaggggctggagacgagactcctccatgc
tatgtcctacagatagatgaatttaagtttcttttggactgcggatgggatgaaaagttt
gatatggagtttataaaagaactgaaaagacacataaacacaatagatgcagtattaata
tcacattcggaccctgttcacctcggagccttgccctacgcagtggggaagctcggcctc
aactgcccgatatatgcaaccttaccggtatacaagatgggtcagatgttcatgtatgac
ttgtaccaggctcacaggaatgtctcggagtttgatttgtttacgttggacgatgttgat
gcggcttttgataggattgtgcagctgaagtataatcagagtattgatatgaaaggcaaa
gggctaggtctccgtataaccccattacctgccggtcactctctcggaggtacagtctgg
aggatagcagcacctggtgaagaagacatagtttatgctcctgacttcaaccacaaaaag
gaacggcatctcaatggatgtgagattgagaggctcatgagaccttcactgatgctgctc
ggagctatgaatgcagattatgttcaacagagacggagattgagggatgagaaattgatg
acaacaatcctgtcgactctccgcggcggtgggtgcgtgctggtctgcacggacaccgcg
ggccgagtgctggagctagcccacatgctggaccagctgtggcgcaacaaagactccggg
ctggtcgcctactcacttctactgctgtcgaacgtcagttacaatgtcgtcgagtttgct
aagtctcagatagaatggatgagcgacaaactgactcgtgccttcgaaggcgcccgcagc
aacccgttcgccctccggcacctgcagctgtgccactcggtgggcgaggtgagccgcacg
cccgggcccaaggttgtgctggcctccttccccgacctggagtcaggcttcgccagggac
ctgttcctgctatgggctcctaatccgcagaattctattgtattgacggctaggacttct
ccaggcacgttggctcgtgacctcatagagaaaggcggcgaccgcaccctcgagctgacc
gtgcggcgtcgcgtcaggctcgagggggcagagctagaggagttcatgcagaaccagagg
gtcaaggtcaacaatactgtcaatatggtcggctccagggaggagtcgggcggcatctcg
tcggactcggactccgacggggagctggagatgtgggtggtgacgggcaagcacgacatc
cccgtccgccacgacgtgcgcgccgccggctgcttcaagtccaacaagcgacatcacgcc
atgtaccccttccacgaggagaggacgcgcgccgatgactacggcgagatgattaagcct
gaagactacagattagctgaaatagtggacgcggaaggagaaatccgggatgtaccaccc
gctccaatacctaagcaagaaccagaagaggagatgacagaaatccctagcaagtgcata
tcgtcgacgcgtcaagtgcagatcaaggccaacatccagtacatagagctggagggccgc
tgcgacggggagtccttactgcgggtcgtgacgcaggccaagccgcgagccattgtaggg
ctcagggcacatcggggggccttgcagacactcaaaaaacactgtgaagctgagggtatt
gaaaaaatatacatcccatcagctggtgaagtcatagacgctactactgaatcgcatatt
taccaagtgaagctgacagacagcctgatgtcggggctggcgtggcgctcggcgggcgac
gctgagctggcgtggctctccgcgcagcttgtaccgcgcgctagtcagagggagaatgcc
actgctatagaggaggccacgtcggacgtgtcgatgtcgctggaggcgcaggcggcgggc
ggcgcgcacgcggcgtcgttcgtgaacgcgctgcgcctgtcggagctgcgcgccgcgctg
caccgcctcgggctcagcagcgagttcagcggcggcgcgctcgagtgctgcaacgggacg
ctcgccatacgcaggttggagaatggccgcgtcgcgttagaaggcgtcctatcggaagag
tactacaaagtgcgagaactgctctacgaacagtttgctatagtctga
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