Trichoplusia ni (cabbage looper): 113492536
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Entry
113492536 CDS
T05757
Name
(RefSeq) probable nucleoporin Nup54
KO
K14308
nuclear pore complex protein Nup54
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113492536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113492536
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113492536
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
GxGYxYP_N
Motif
Other DBs
NCBI-GeneID:
113492536
NCBI-ProteinID:
XP_026725823
UniProt:
A0A7E5VBZ8
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Position
4:2906536..2919273
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AA seq
580 aa
AA seq
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MAFSFGAPSTQSSTFGAAAKPTFSFGGATTTTTSSGFGSFGAPATSTGFGTFGAPATSTA
PFGQLGSAPASTAPSLFGGTGFGAAAAKPATGFGATTFGSNTFGTGTGFGTGAPTFGSAA
PAFGSTAPTFGSTAPTFGTNTLGGFGTGNTFNSSFGAKPATGFGGFGSNLGSSTQFGQPQ
QQQQQQQQQQQAGPSSAHEALVAAVFNCNVFGDERDQVLAKWNLIQAMWGIGQAYYSRNA
PPLELNEQNPLCRFKSVGYSRLSGRDDKDGHVAMMFNKSEQDIKNNQQALITSLQGLLGN
KPNLAVNIECIKAVSDTKSQVVIFVVDKGAGGAPVSAGELAGFLWGGGARAALGGAGCVS
VTPVTAPTPQMLAHYLQTPPPGMDKRLWKQAQADNPDPENYIPVPIIGFSEIKFRSRCQS
EQARLQAQWLQRAAGELAELRTRRAAASARLADLAARLHARRHTLLQVVARREVIGRVGA
ALSPEEEAARARLHELTSQLAAPPLYNGRLNELLCAVRLQRSASTGASHERYHLDPGAQE
DVKQFLSLQQKGMAHLLDTARKDLAALGIIAEGMSRLVRA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcttttggagccccaagtactcaaagttcaacttttggtgctgctgctaaa
cccactttttcatttgggggtgctacgacaacaactactagctctggatttggttcgttt
ggggcgcctgccacttctactggatttggaacatttggcgctcctgccaccagcactgca
ccatttgggcaattaggaagtgcaccagcatcaactgctccatctttgtttggcggtacg
ggatttggagctgccgctgctaagcctgccacaggttttggagctactacctttggttct
aacacatttggcactggcactgggtttggaacaggagcaccaacatttggtagtgcagct
ccagcatttgggagtactgcaccaacatttggcagtactgcaccaacttttggtaccaac
actcttggtggttttggtactggaaacacatttaactcttcatttggggccaagccggcc
acaggctttggaggtttcggaagtaatcttggatcatcaactcaattcggtcagccacag
caacagcaacaacaacagcaacaacagcagcaagctggcccatcatcagcacatgaagca
ttggtagctgcagtcttcaactgtaatgtgtttggggatgagcgcgaccaggtacttgct
aaatggaacctgatacaggcaatgtggggaattggccaagcatactacagccgtaatgcc
ccaccactagaactaaatgaacagaacccgctatgcaggttcaagtcagtgggctattct
cgccttagcggtcgcgacgataaagacggccatgtcgccatgatgttcaacaagtctgaa
caggatattaaaaataatcaacaggctctaataacgtctctgcagggtttgttgggaaac
aaaccaaacttagcagtcaatattgaatgtattaaagccgtatcagacaccaaaagccag
gtggtgatattcgtggtggacaagggcgcgggcggcgcgccggtgtcggcgggcgagctg
gcgggcttcctgtggggcggcggcgcgcgcgcggcgctgggcggcgccggctgcgtgtcc
gtcacgcccgtcaccgcgcccacgccgcagatgctggcccactacctgcagacgccgccg
ccaggtatggacaagcgtctctggaagcaagcacaggcagacaatcctgatcctgagaac
tacattccagtgcccattattggattctctgagataaagtttcgcagccgctgccagtcg
gagcaggcgcggctgcaggcgcagtggttgcagcgcgcggcgggcgagctggccgagctg
cgcacgcgccgcgccgccgccagcgcgcgcctcgccgacctggccgcgcgcctgcacgcg
cgcaggcacacgctgctgcaggtggtggctcgccgtgaggtcataggtcgcgttggcgcc
gctctgagtccggaggaggaggctgcacgggcgcgccttcacgagctgacgtcacaactc
gcagcccctccgctgtataacggtcggttgaatgagctgctctgtgcggtgagactgcag
cgcagcgccagcacaggcgcatcgcatgaacgctaccatctggatcctggtgcacaagaa
gatgtgaagcagtttttgtctctacaacagaaagggatggctcacctgttggacacagcg
cgtaaggacttggccgcactcggtattattgccgagggcatgtcgcggcttgttagagct
taa
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