Trichoplusia ni (cabbage looper): 113492968
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Entry
113492968 CDS
T05757
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113492968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tnl03032
]
113492968
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113492968
DNA replication proteins [BR:
tnl03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
113492968
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
113492968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
ECT2_BRCT0
TopBP1_BRCT0
Motif
Other DBs
NCBI-GeneID:
113492968
NCBI-ProteinID:
XP_026726521
UniProt:
A0A7E5VE29
LinkDB
All DBs
Position
4:9892954..9911574
Genome browser
AA seq
1309 aa
AA seq
DB search
MTEDISVTFIIPKDCRNESECSEEMQLAFLTCEQHCGGGLQARWVHEDKWTKFDGLTKRD
VFVLTEFEGDLYSKLQKTKCLLVGPRCLSCCLTEGTPIPSGPEPVYTIAMRGLVVTASGL
TKAQKEEIKKKVHWMGGIYNTVLTDDTTHLISDTVLSDKYIKAVEKGIPVMAMTWLQAVW
DASLRANVSGASTDFLVHRLPPFTNLQVTTSGITKKEKQLVMKLVNEHGGVFSGAFQSET
TDVVVLTKDGVGSEKYKAALEYGKAVVLPAWVKDSAARGVALPLAKYRVAGASTSSPLAE
SRLPDMSLNFSRITNLRPPSNFVDETRSADVSVMSGKGVKLTQDAKKADVSIDKEILTAF
ENFDMSLIKKAGPIFDGFCIWVSGVEGALRERLSACVSRCGGVRYDGPHSRVTHCVAPRS
AAAAAARRLPAAPVLSPLWLLRSVEAGRALDEAQFVIDTKPSTPGKSSARKPRPEPASPM
SKRNLALLRRGPLDLPPPTPEVDEPQDELVNHYLSQKVPEPEESKSPEPKRNVTVRQEQP
DVTEDMAEDPTEEIEQIFRGMKIEVQGLDEDAICELGAEVSAAGGRLVAAGAGGSHVLVP
LDFDTDELLNGKAEPVTVFWVKDCLSQQELVPIQYYHRSVKVPAGAPLAGVVASLSTYSG
VERAFLDELAKLLGATTQLRFCRRNTATALASTHLICPTAAGDKYAGALKWGLPAVTADW
LAACAGQGRRVSEKEYLVGETKAPPSPQPQPEPTDPIEVAPEPEKQSPQQQNIQEHIATD
KENAMLPPAARRGSVPSREQTPSKKDVDEMSPASRYIAMARQGLLGSDSQETPKRVADLK
DGARQGDNVVRTPPLEDALSTPNLVGLSPTTRWRLQAVRRGEMPSDPIRTPTDPFARPPP
TPDSAFGAALRPGSGRMSPDARKRLWALVRDLPGKQDPPPRDKHTPLSEIRNRFLAQFNG
DAPTPPSEHNLAPRKLQLQDQSETPPSKIQKLTEDQSPGGFSTTAEDTPKSVSSPAIPAA
VDAQLQRLTAALAGRLSSQRARRNRDSVSIPVPAPDSEPAPESQPNTVGWDDTTPAQQAA
TTEPEADREAEPTPVKRFMLSSNVDNRDEIISMITSLGGEICEGAELDPLATHLICAAPG
RSEKMLGSVAAGRWVLHPLYITSSHAAGSFLSEEEFEWGNPSGRLPPVAGGERSLARAAH
RWRAARARGAAGPFAGVVALLHVPDARRRLLARLVCAGGGHAPDDEPPYTNDNITVCFAD
IKRYPLSDRDSAWLISKRIPVCAPVLLSSYLTDDPPPRPEEHCLPDFRP
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggatataagtgtaacgtttattattccaaaagactgccgaaatgagagtgag
tgttcagaggagatgcaattagcgtttctgacttgtgaacagcattgtggaggaggtttg
caagcaagatgggtgcatgaagataaatggaccaagtttgatggtctcacgaaacgagat
gtatttgtattgacagagtttgaaggagatttatacagcaaattgcaaaaaacaaagtgt
ttactggttggtccccgctgtttatcatgctgtctgacagaaggtaccccaatcccttcg
ggcccggagcctgtgtacacaatagcgatgagaggtctggttgttacagccagtggattg
accaaggcgcaaaaggaagaaataaagaagaaagtgcattggatgggcggcatatacaac
actgttctaacagatgacacaactcatctaatatcagacacagttctctctgacaagtat
attaaagctgtagaaaaaggcatcccagttatggcaatgacttggctgcaagcggtatgg
gacgcgtccctccgcgccaacgtcagcggtgcctctacagacttcctcgtccaccgatta
ccaccattcacgaaccttcaagtcacgacgtctggtatcactaagaaggagaagcagtta
gtgatgaagctcgtgaatgagcacggaggagtattctcaggagccttccagagtgagacc
actgatgttgtggtgttgaccaaagacggtgtcggtagtgagaagtacaaagccgcgcta
gagtacggcaaggcggtggtcctgcccgcctgggtcaaggactcggccgccaggggcgtg
gcgctgccgctcgccaagtaccgggtggccggggcctccacatcctcaccactcgccgag
tccaggctgcctgatatgagtttaaacttctcccgtatcacaaacttgaggccgccgagc
aatttcgttgatgaaacaaggtctgctgatgtatcggtcatgtcggggaagggggtcaag
ttaacccaggatgcgaaaaaagctgacgtgtctatagacaaagaaatattaacagcattt
gaaaattttgatatgagtctcatcaaaaaggctggtcctatatttgatgggttctgtatc
tgggtatcgggcgtagagggcgcgctacgcgagcgcctgtcggcgtgcgtgtcgcgctgc
ggcggcgtgcgctacgacgggccgcactcgcgcgtgacgcactgcgtagcgccgcgtagc
gccgccgccgccgccgcgcgccgcctgcccgccgcgcccgtgctcagcccgctgtggctg
ctgcgcagtgtggaggcgggccgcgcgctggacgaggctcagttcgtaatagacacgaag
ccgtcgaccccgggcaagtcgagtgcccgcaagccccggcccgagccggcctcgcccatg
agcaagcgcaacctggcgctactgcggcggggcccgctagacctgcccccgcccacgccc
gaggtggacgaaccgcaagacgaactggttaaccattatttgagtcagaaagtaccagaa
ccagaagaatcgaaatcaccggagccgaagcgcaacgtaaccgtgcgacaggaacaacct
gacgtcacggaggatatggctgaggaccccaccgaggagatcgaacaaatatttaggggc
atgaaaatcgaagtgcaaggtctcgacgaggacgccatctgtgagctaggcgcggaagtg
tctgcggcgggcgggaggctggtcgcggccggcgcgggcggctcgcatgtactcgtgccg
ctggacttcgacacggacgaactgctgaacgggaaggcagagcctgtcactgtgttctgg
gtgaaagactgcctgtcgcaacaagagctggtccctatccagtactaccaccgctcggtg
aaggtccccgcgggcgcgccgctggccggcgtcgtggccagtctcagcacctacagcggc
gtcgagcgggccttcctggatgaactggccaagctgctgggagctactacccagctccgc
ttctgccgccgcaacacagcgacggccctggcgtccactcacctgatctgcccgacggcg
gccggcgacaagtacgcgggcgcgctcaagtgggggctgcccgccgtcaccgcggactgg
ctcgcggcctgcgcgggccagggccgcagggttagtgaaaaggaatacctcgtgggggag
actaaagcaccaccatcaccacaaccacaaccagaaccaaccgatccaatagaagtggca
cccgaaccagaaaaacaatctccacaacaacagaacatacaagagcacatcgcgacagac
aaggagaacgccatgctgccgcccgccgcacgacgcgggtctgtgcccagtcgagaacaa
actcctagtaagaaagacgtagacgagatgtccccggcgtcccgctacatagcgatggcg
cgtcagggcctgctcgggtccgactcgcaggagacgcccaagcgggtcgccgacctgaag
gacggggccaggcaaggggacaacgtagtaagaacacctcctttagaagacgctctgtcc
actcctaacctggtggggctgagtcccaccacgcggtggcggctgcaggccgtgcggcgc
ggggaaatgccctccgaccccatacggacaccgactgaccctttcgcgcggccgccgccg
acgccggacagcgcgttcggcgcggcgctgcggccgggctcgggccgcatgtcgcccgac
gcgcgcaagcggctgtgggcgctcgtgcgcgacctgcccggcaagcaggacccgccgcca
cgggacaagcatacgccgttgtcggagattcgaaatcggttcttggcgcagttcaatgga
gacgctcccactccaccctcagaacataatctagctccgaggaaattgcaactacaagat
caaagtgaaacacccccatctaaaatacagaaattgactgaagaccagagtccaggcggc
ttcagtacgacagccgaagacactcctaagagcgtgtcgtcgcccgccatcccggccgcg
gtggacgcgcagctgcagagactcaccgccgcgctggcgggcaggctcagctcgcagcgg
gcccggcggaacagggactcggtgtccatacccgtgcctgcaccggattccgagccggcc
cccgagtcgcaaccgaacacggtcggctgggacgacacgacgcccgcgcagcaggcggcc
acgaccgaaccggaggcggatcgtgaagcggaaccgacgcccgtcaagaggttcatgctg
tcttctaatgttgataatcgcgatgaaataatatcaatgataacttcacttggcggtgaa
atatgcgagggtgcggagttagaccctctcgcgacacacttgatatgcgcggcgccgggc
cgcagcgagaagatgttgggctccgtagcggcgggccggtgggtgctacacccgctgtat
ataactagcagtcatgccgctgggagttttctgtcggaagaagaattcgagtggggcaac
ccgtcaggccgcctgccgccggtcgcgggcggggagcgcagcctggcccgcgcggcgcac
cgctggcgggcggcgcgcgcgcgcggcgcggccgggcccttcgcgggggtggtggcgctg
ctgcatgtgcctgacgcgcgccgccgcctgctggccaggctcgtctgcgcgggcggcgga
cacgcgcctgatgatgagccgccatacacgaacgacaacatcacagtttgcttcgcagac
atcaaacgctatccgctctcagaccgagacagcgcttggctcatatctaagaggatacca
gtatgtgcccctgtgttactaagttcatacctcactgatgaccctccgcccaggccagag
gaacactgcttaccggattttagaccttaa
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