Trichoplusia ni (cabbage looper): 113493060
Help
Entry
113493060 CDS
T05757
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113493060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113493060
03012 Translation factors [BR:
tnl03012
]
113493060
Enzymes [BR:
tnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113493060
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113493060
Translation factors [BR:
tnl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113493060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_N
OB_NTP_bind
ResIII
HA2_C
AAA_19
nSTAND3
AAA_11
Cas3-like_C_2
ABC_tran
AAA_22
RsgA_GTPase
PhoH
NB-ARC
Motif
Other DBs
NCBI-GeneID:
113493060
NCBI-ProteinID:
XP_026726658
UniProt:
A0A7E5VED3
LinkDB
All DBs
Position
1:complement(7906311..7914020)
Genome browser
AA seq
1065 aa
AA seq
DB search
MSRRGGWNRSSYKNVNKDRPRGLRGKDIGMYYKNLQMRNGNRTKKNLDITINLTIPPAVL
TSLQKNIESIKKIAKEHQIDIQPPKPLKIVEIKQEVSPESFDHKFAPPSGVPLMRNFGDP
SISEEPSTSSSFIKSEDVKVEIKEEVMESSFTEDQDPEPGHSDQRLVSALKGAGDYKYGY
EDIITGTFQEKLDECLSKGVTISMENEDISALNESIYESYQSKINTPEYKKFKKFRKILP
TYKKSEELLKVFNENQVVVVSGETGCGKSTQIPQIILDDAIINKRGANIHILVTQPRRIA
ASSLATRVAEERNESLGISVGYAVRLEKSEARPRASIMFCTTGILLAELETNQGLTNYSH
VILDEVHERDTHIDLSMFMLKQVLKKRKDLKLILMSATIEADKLCSYFDGCPMMHIEGLA
YPVKDIYLEEILQMTKFTLPEEPAQGRGNQHVKPWQRSKMKKQAAEMQMDIQYKAEIAPW
LESIKKKLDRSVYQTLQNAKIEELNIDLIYELLIHISKGDPGAVLVFLPGIGEISKLLRK
MDESTFFSRDRYEIYPLHSKLPSLEQRKIFQKPPDGIRKIIVATNIAETSITIDDIVYVV
DCGKIKYSGLNIEDNVSTLQTEWIAQANLRQRRGRAGRCQPGICYHLVTSYRAGKLAERL
LPELQRNSLLEPVLAIKQLRLGKAADAMSKMPSPPADTTVQRAVKHLSQVGALDQEETLT
PLGWHLARLPVHPAAGKLLLLGTMFGCLDRAASVAAVWGFKDPFQLVIGKEREVDEMKRI
LSLGEPSDHVAISEAIIRFEQHYNYNHKRVFAREHFLAYNTLGLLSEMKNQFGHNLKQMG
FLSSGDVTSAWENRNRDNLSLFKAIVAASLYPNIATVRWGRTNSRNPSRPPRVKVRTPED
GPINIHPSSVMASKPYGFQSGYSSGPEPGANWLVYWLKQRSSDLFLIDVTLVYTLPFLFF
GEFVVSEAGPSDYCVLISSVKVTCKKTTLELLWQMRSLLDQVLASKIGDRSPCWTRNNHF
ENKVLDSVKELITAEDESAEYIGDEEDDNSESDYSDYGSSWSWRH
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacgtggtggatggaatagatcatcttacaaaaatgttaataaggataggccc
cgcggtttacgcggcaaagacatcggcatgtattataaaaatttacaaatgagaaatgga
aacagaaccaaaaagaatttagatatcacgataaaccttacgatcccacccgccgtatta
acgagtttacaaaaaaatatagagtctatcaaaaagatagccaaggagcatcaaattgat
atacaaccacccaaacctttgaaaattgtggaaataaaacaagaagtaagtcctgaaagt
tttgatcataaatttgctccgccatctggggtaccattgatgagaaactttggtgacccc
agtatatctgaagaaccatctacatcttcaagttttattaaatctgaagatgtgaaggtt
gagataaaagaggaagttatggagtcttcattcactgaagaccaagatccagaacctgga
cattctgaccaaaggcttgtgagtgcattaaaaggagcaggagactacaagtatggatat
gaagacattattacaggcacgtttcaagaaaaacttgatgaatgtctctccaaaggtgtc
actatatctatggaaaatgaagatatcagtgctctgaatgaatccatatatgaaagctac
cagagcaaaataaatactccagagtataagaaatttaagaagttccgtaaaatattgccc
acttataagaaatcagaggaattgttgaaggtttttaatgaaaatcaagtggttgttgtt
agtggtgagactgggtgcgggaagtcaacacagatcccacaaataattttagatgatgct
ataattaataagagaggtgccaacatacatattctagtcactcaaccgcggcgtatagcg
gcgtcttctttagccaccagagtagctgaagaaagaaatgaatccttaggcatatctgta
ggatatgctgttagattagagaaatcagaggcgaggcctcgcgctagtataatgttttgt
actacgggtatattattagccgagttggaaaccaaccaaggcttgacaaactacagtcat
gtgatacttgacgaggtgcacgagagagacacccatattgacttgtccatgtttatgttg
aaacaggtactaaagaaacgcaaagacttaaaactaattctaatgagtgccaccatagag
gccgataaactgtgttcatacttcgacggctgtcctatgatgcatattgaggggctagct
taccccgtcaaagatatttacttggaggaaatcctgcaaatgactaagttcacgttaccg
gaggagccagctcaaggacgcggaaaccaacacgttaagccctggcaaagatctaagatg
aagaagcaagctgctgagatgcagatggatatacagtataaggcagaaatagctccatgg
ctggaatccataaagaagaagttagatcgaagtgtttaccaaactcttcagaatgcaaaa
atcgaggaattaaacatcgatctcatttacgaactgctgatccatatcagcaagggagat
cccggcgctgtcctcgtctttctgccagggatcggcgaaatatcaaaattactgaggaaa
atggacgaaagcacatttttctcgagagatcgctatgaaatctatcccttgcattctaag
ttgccatctttagagcaacggaaaatatttcagaagcctcctgatggtataagaaagata
atagtcgctacaaatatagcggagacatccattactattgatgacatcgtatacgttgtg
gattgcggcaaaataaaatacagcggtctgaatattgaagataatgtgtccacattgcaa
actgagtggatagctcaagcgaatttacgtcaaagacgaggtcgcgccggtcgttgccag
ccgggcatatgctaccatttagtgacgtcataccgtgcaggaaaattagccgagcgactg
ttaccggaattacagaggaactccttgttagagccagtactggctataaagcagcttcgg
ttgggaaaggcagctgatgctatgagcaagatgccttcgcctcctgcagataccactgtt
cagcgagctgtgaaacatttatcgcaggtaggcgcgctagaccaggaggagaccctgacg
ccgctgggctggcacctggcgcggctgccggtgcacccggcggcgggcaagctgctgctg
ctcgggaccatgttcggctgtctcgaccgcgccgccagcgtcgccgccgtctgggggttc
aaggaccccttccaactcgtcatcggaaaggaaagagaagtagacgaaatgaaacgaatc
ctatctctgggagagccgagtgaccacgtggcgatatccgaggcaatcatacgatttgag
caacattacaactacaaccataaacgtgtatttgcacgcgaacacttcttagcttacaat
actttaggattactctctgaaatgaaaaatcagtttggtcacaatctgaagcaaatgggt
ttcttgagttctggcgatgtgacttcagcgtgggagaaccgcaatagggataatttgagc
ctcttcaaagccatagtcgctgcatcgctttatcctaatattgctactgttcgatgggga
aggacaaactccagaaatccttcccgcccgcccagggttaaggtgaggacaccagaagat
ggcccaataaatatccatcccagcagtgtcatggcgtcaaaaccttacggattccaatca
gggtactcaagtgggccagagcctggggccaattggctagtgtattggctcaaacaacgt
tcttcagacctcttcctaattgatgtcactctagtctacacgttaccgttcttgtttttt
ggtgaatttgttgtttcggaagctggaccatcagactactgtgttttgatatcaagcgtc
aaagtaacgtgtaagaaaacgacactggagctgctttggcaaatgagatctttattagat
caagttttagcgtcaaaaatcggtgacaggagtccctgttggactcgtaataatcacttt
gagaacaaagtgttagactctgtaaaggagttaataacagccgaagatgagagcgctgaa
tacataggtgatgaagaagatgacaattctgaatctgattattctgattatggatcgagt
tggtcctggcgtcattaa
DBGET
integrated database retrieval system
