Trichoplusia ni (cabbage looper): 113493249
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Entry
113493249 CDS
T05757
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113493249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113493249
03041 Spliceosome [BR:
tnl03041
]
113493249
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113493249
Spliceosome [BR:
tnl03041
]
Complex B
Other components
Prp19-related factors
113493249
Complex C
113493249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
Mad3_BUB1_I
PPR
DHR-2_Lobe_A
NRDE-2
TPR_10
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
113493249
NCBI-ProteinID:
XP_026726925
UniProt:
A0A7E5VF80
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All DBs
Position
4:16070968..16074071
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AA seq
841 aa
AA seq
DB search
MPLLDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKAAPKHEINMIYERALKEL
PGSFKLWYNYLKLRRSQIRGKCITDPCFEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITVTRKAFDSALRALPITQHHRIWPLYLIFLKKHNISETAVRVFRRYLKLCPEDTEEYI
DYLISINKLDEAAVKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPSPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEDKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYEKNEQIEDARLIFEKATQ
VNYAKVDDLASVWCEWAEMEIRHENYEEALKLMQRATVLPSRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMAVYERATTAVLQEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPDEK
SREMCIRFSEMETRLGEIDRARAIYAHCSQMCDPRITAEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVQSKG
NISFVRGETQGLKDSDDKVVNPDEIEIDEESENSEDESEVAPVQKKEIPAAVFGGLVKDT
E
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgcctttactagacggcaaggaaatagacatattctttagtgaagaagatctcccgtat
gaggaggagatattaaggaatcccttttcagttaaacattggcttagatacatagaacat
aagaaagcagctcctaaacatgagattaatatgatctatgaaagagctttgaaagaacta
ccagggtcattcaaattatggtataactatttaaaattgagaagaagtcaaattcgaggc
aaatgcattactgacccttgttttgaagatgttaacaattgctttgaaagatctttagtg
tttatgcataaaatgccaagaatatggatggattactgtacatttctgactgatcaatgt
aaaataacagtcactagaaaagcatttgatagtgcattaagagctttgccaataacacaa
catcatagaatatggcctctttacttaatttttttgaagaagcacaacatttctgaaact
gcagtgagagtatttcgacgctatctgaagttatgtccagaagacacggaagagtatatt
gactatctgatttctattaataaactggatgaagctgcagttaagctagcccaaatagtg
aacaatgaaaattttcaatcaaagcatggcaaatccaaccatcaactgtggaatgaactt
tgtgaattaatatccaagaacccagatcaaattcattctctcaatgtggatgctatcatt
agaggtgggctcaggcgatatacagatcaacttggtcatctgtggaactcattggctgat
tactatgtaagaagtggtctatttgagagagcaagggacatttatgaagaagccatacaa
acagttacaacagttagagatttcactcaagtctttgatgcatatgctcaatttgaagaa
ctcagcctaagcaaaaagatggaagaagtggcaaaaaaacctagccctactgaagatgat
gacattgatcttgaacttagacttgcaagatttgaataccttatggagagaagattattg
ttattgaactctgtgctgttgagacaaaacccacacaatgtggctgaatggcataagaga
gttaaattatatgaagataaaccccatgaaattattgatacctatactgaagctgttcaa
acagtagaccctaaactggctgttggtaaattatacaccttgtgggttggttttgctaaa
ttctatgaaaaaaatgagcagatagaggatgcaagactcatatttgaaaaggcaacacaa
gttaactatgctaaagttgatgatctagcttcagtctggtgtgaatgggcagaaatggaa
ataaggcatgaaaattatgaagaagctcttaaattaatgcaaagagctacagttttacct
agccggaaagttgcttatcatgatgatactgagacagttcaaatgaggttgtataagtct
ctaaaagtttggtccatgtatgctgatttagaagaaagttttggtacatataaatcatgt
aaagcagtttatgaccatatcattgacttgaaaattgcaacaccacaaatcataataaac
tatggcctctttttagaagagcacaattactttgaggaggcttttagagcttacgaaaag
ggtattgctttattcaaatggcccaatgtttatgatatttggaacacctatcttacaaag
tttttgaagagatatggtggatcaaaacttgaaagagctcgggatttatttgaacaatgc
cttgaacattgtcctcccgagtttgcaaagtctatatttttactatatgctaagctagaa
gaagaacatggtttggctagacacgctatggcggtatatgaacgagccacaactgcagtt
cttcaggaacaaatgtttgaaatgttcaatatttacattaaaaaagctgctgaaatatat
ggcgtgccaaagactcgtcaaatatacgaaaaagccattgaaacacttcctgatgaaaaa
tcaagagaaatgtgtatacgcttttcagaaatggaaacacgcctcggtgaaatagataga
gcacgcgccatatacgctcattgtagtcagatgtgtgatccaagaatcacggctgagttt
tggaacacttggaaagagttcgaagttcgtcatggcaatgaagacacaatgcgagaaatg
cttaggattaaacgaagtgtccaagctacatacaatacacaagtgaatatgatgtctgct
caaatgttaagttctgcagctcaagcagctggtactatttctgatcttgcgccaggtatg
aaggatggcatgagaatgttagaagccaaagctgcagagatggctgtccaaagtaaaggc
aacatttcatttgtacgaggtgaaacacaaggtcttaaggatagtgatgataaagtggtt
aatccagatgaaattgaaattgatgaggaatctgaaaacagtgaagatgaaagtgaagtt
gctcctgttcagaaaaaggaaatcccagctgctgtgtttggaggacttgtcaaagacact
gaataa
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