Trichoplusia ni (cabbage looper): 113493260
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Entry
113493260 CDS
T05757
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03020
RNA polymerase
tnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113493260
09124 Replication and repair
03420 Nucleotide excision repair
113493260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnl03021
]
113493260
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113493260
Enzymes [BR:
tnl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113493260
Transcription machinery [BR:
tnl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113493260
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113493260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
113493260
NCBI-ProteinID:
XP_026726952
UniProt:
A0A7E5VF91
LinkDB
All DBs
Position
4:complement(16173520..16177538)
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AA seq
1176 aa
AA seq
DB search
MYDTEDDHYEEIDVEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPPIELQAEAQHSSGEIETPPRYLLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKEHEDPVETQHQKTFIGKIPIMLRSTYCLLNNLTDRDLSELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKTEIRSCLEHSSRPTSTLWVNMM
ARGGQNIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENGALLLKKKHIDDLKERDFNNYGWQNLVASG
VVEYIDTLEEETVMIAMSPDDLAQVKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQG
MRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRYSKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE
GITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQEYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVVN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacactgaagatgaccattatgaagaaatcgacgtggaagaaatttcctctgaa
ctctggcaagaggcctgctggatcgtcatcaacgcttactttgatgaaaaagggttagta
cgccagcagttggacagttttgatgaatttattcaaatgtctgttcaacgtatagtagag
gattctccacccatcgagttacaagctgaagctcaacattcatcaggtgaaatagagaca
ccgccaagatacctattgaaatttgaccaaatatatttatctaaaccaacacattgggaa
aaagatggagcgccgtctcctatgatgcctaacgaagccaggcttcgtaatctgacttac
tcagcaccattgtatgtggatataacaaagactattgtgaaggaacatgaagatcctgtt
gaaactcaacaccagaaaactttcatcggaaaaattcccattatgttacgatctacatat
tgtttactcaacaatttgactgacagagatttatcagaattaaatgaatgcccacttgac
cctggtggttattttatcatcaacggatcagaaaaagtattaattgctcaagaaaaaatg
gctaccaatacagtgtatgtgtttagtatgaaagacggcaagtttgcatacaaaacagaa
attcgttcttgtcttgagcacagttctagacctacatcaacactgtgggtcaatatgatg
gctcgtggtgggcaaaatataaagaaatctgctattggccaaagaattattgcaattgtc
ccatatatcaaacaagaaattcctattatgattgtattcagagctcttggctttgtggcg
gacagggacatattagaacacattatctatgattttgatgatcctgaaatgatggaaatg
gtaaaaccttcactagacgaagcttttgtgattcaagaacaaaatgtagcacttaatttt
attggtgcccgtggtgctcggcctggtgttacaaaggagaagcgtattaaatatgcaagg
gaaattctgcaaaaggaaatgttacctcatgttggtgtatctgatttttgtgaaactaaa
aaagcttactttttgggatacatggtgcacaggttattgcttgctgcattgggtcgtcgt
gagcttgatgacagagatcattatggcaacaaacgcttagatttggctggaccccttctt
gctttcttattcagaggcctattcaagaaccttctgaaagaagtaagaatgtatgcgcag
aagtttattgaccgaggaaaggattttaatctggaattggcaattaaaactaagataata
actgatggattgagatactctcttgctactggaaactggggtgaccaaaagaaagctcac
caagctcgtgctggtgtgtcacaagtattgaatagactaacctttgcatcaacactgtct
catttaagacgtgtgaactctcccatcggtcgtgatggtaaattagccaaacctcgtcag
ttacacaacacactgtggggtatgatttgtcctgctgagactccagagggtgcagctgta
ggcttggtaaagaaccttgctctgatggcatatatctctgtaggaagtcaaccatctcca
attttagagttcttggaggaatggtcaatggaaaacttagaagaaattgcaccatcggct
attgcagatgctacaaaaatatttgttaatggttgttgggttggtattcacagagatcca
gaacagttaatggcgacactgagaaaactaagacgccaaatggatattattgtgtctgaa
gtgagcatgattcgtgacattagagacagagaaatcagaatttacactgatgctggaaga
atctgtcgcccattattgattgttgagaatggagctttgttattaaagaaaaagcacatt
gacgatcttaaggaaagagactttaataactatggttggcaaaatttggtagcaagtggt
gttgttgaatatattgacaccttagaagaagaaactgtaatgattgcaatgagtccagat
gacttggcacaagtcaaagagtatgcatactgtactacatatactcattgtgaaattcat
cctgctatgatactgggtgtttgcgcttctattatcccattccctgatcacaatcagagc
cctaggaacacttatcaaagtgctatgggtaaacaagccatgggtgtgtacatcactaat
ttccatgtgagaatggacacactggcacatgtactgtactatccacacaagccattagtt
accactcgttctatggaatatctgcggtttagagaactgcctgctggcattaactccatt
gttgctatcttgtgttatacaggatataatcaagaagacagtgttattttaaatgcatca
gcagttgagagaggattctttagatctgtgttttatcgctcatacaaagattcggagtcc
aagaggattggagaccaagaagaacaattcgagaaaccaactagacaaacatgtcaaggc
atgcgaaatgctttatatgataaattggatgatgatggcatcattgctcctggcataaga
gtatctggtgatgatgtagtaattgggaaaacaattacattacctgaaaatgatgatgag
ttagaaggtacaacaaaacgttactctaaacgtgatgcatccacatttttacgtaatagt
gaaactggtattgtggatcaagttatgctcacattgaatagtgagggctacaaattttgt
aagattcgtgtaagatccgtacgcatacctcagattggagacaaatttgcttctcgacac
gggcaaaagggtacttgtggaattcagtacaggcaagaagatatgccatttacgtgtgaa
ggcattactcctgatattatcattaatcctcacgccattccctctcgtatgactattggt
cacttgattgaatgcattcaaggcaaagtgtcttctaacaaaggagaaattggtgatgct
acaccgtttaacgatgctgtaaacgtgcagaaaatttcttcactattgcaagaatacggc
tatcatttacgtgggaacgaagttatgtataatggtcatacagggcgtaagattaacgcc
caagtgttcttaggaccgacgtattaccaacgtctgaagcatatggtggatgataaaatc
cattcgagggctcgaggaccagtacaaattttggtgcgacagcctatggagggcagagct
agagatggtggattgcgtttcggtgaaatggaacgtgattgtcaaattgctcacggtgct
gcacaattcttacgggaacgtctttttgaagtatcagatccttaccgcatacacgtttgc
aacttctgcggtttaatagccatagctaacttacgtaacaatacgtttgaatgcaaagga
tgtaaaaacaaaacacaaatttcccagatacgattgccctatgctgccaaactgttattc
caggagctaatgtcaatgaacatagccccaaggctgatggtagtaaattaa
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