Trichoplusia ni (cabbage looper): 113493349
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Entry
113493349 CDS
T05757
Name
(RefSeq) structure-specific endonuclease subunit SLX1 homolog
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
113493349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113493349
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
113493349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
T5orf172
zf-HC5HC2H_2
FANCL_C
DUF7445
Phage_phiJL001_Gp84_N
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
113493349
NCBI-ProteinID:
XP_026727090
UniProt:
A0A7E5VFN2
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Position
1:complement(8806050..8808302)
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AA seq
286 aa
AA seq
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MSDIVPEIVEDFFGVYLLYCINPRYKGRTYIGYTRDPNRRIMQHNRGTWAGGAHRTNNKG
PWKMVMIVHGFPNNISALRFEWAWQNPTKTIRLQHLNLKKVPRKESEFKFKLRVLSEMLR
VGPWFRLPLIIRWLETEYIEEFPPERKPPDHMTIVQGPVKSRNLKRKLLNTTFTEECLLC
SNYINIGQAKTTCLNPSCELLAHITCLADLFLVPGEYVPIEGNCPFCSTKLKWGDIIRKM
KGCAQPGEEVIGEECAEEECLEEECITEEDKADEYPSWFLDCNDDL
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatattgtgccagaaattgttgaggattttttcggcgtttatttattatattgt
attaaccctagatataaagggcgtacatatatagggtatactagagacccaaacagacgg
attatgcagcacaaccgtggcacctgggctggcggcgcccataggaccaacaacaagggg
ccttggaaaatggtgatgattgtgcatggattcccaaataatatatctgcattaagattt
gaatgggcctggcagaatccaacaaagacaattagacttcagcatttaaatttaaagaag
gtaccaagaaaggagtctgaatttaagtttaaactaagagttttaagtgagatgctccgt
gtggggccctggttcagactgcctttgatcataaggtggctagaaactgaatatatcgaa
gaatttcctcctgaaagaaaaccaccagaccacatgactatagttcaaggacctgtaaag
agcagaaatctaaaacggaagcttttaaatacaacatttacagaagaatgcctattatgt
tcaaactacatcaatattggccaagcaaagaccacctgtttgaatcccagttgtgaactt
ttggcacacataacttgcttggccgacctattcttggtaccaggggaatatgtgccaata
gaaggtaattgtccgttttgctccacaaagttaaaatggggagatataataaggaaaatg
aagggttgtgctcagcccggagaagaagttattggagaagaatgtgctgaggaagaatgt
cttgaagaagaatgtataactgaagaagataaggctgatgaatatccgtcatggtttctt
gattgtaatgatgatttgtga
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