Trichoplusia ni (cabbage looper): 113494215
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Entry
113494215 CDS
T05757
Name
(RefSeq) exosome complex component MTR3-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113494215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113494215
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
113494215
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
113494215
NCBI-ProteinID:
XP_026728242
UniProt:
A0A7E5VIX2
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Position
5:6335885..6342572
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AA seq
310 aa
AA seq
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MPLDYRRFNGPDDSVSYKRFTKDYLKTYDELYKELLDDKGVRKDGRALSEARSMCMFFAR
TDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFSQLGQIFCEVKFAPFSCPRRRRPH
APDAEEKALSVALRKALEPTVCRHLFPNYQVDVFIYILEHDGACLSAAINAAGLALADAA
VPMYDIITACSVAIVGDRLFVDPTEAEEHVATISPETNSNHGVITMSMLSELKQISDFAL
VGSLDTECVNTAMDILEKECESLVPQMQKVLVTNIVKSFEQRQRLEEEANEREQALNIKM
EEWRKLLNAG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgcctctggattatagaagattcaatggacctgatgatagtgtgtcttataaacgtttc
actaaagattacttgaagacatacgatgaactttacaaggagttactggatgataaagga
gttcgtaaagacgggcgcgcgttatctgaagcgcgtagcatgtgtatgttttttgctaga
acggacatggtatcacaggcgaagggatcagcttacgtcgagttaaggaaaacaaaagtt
gtttgctctgtttttgatccgagagagattcctcatcagaatgagttcagtcaacttggt
caaatattttgtgaggtgaaattcgcgccattttcgtgtccccgccggcgccggcctcac
gcgcctgatgctgaggagaaagctttatcagtggcgttgaggaaagctttagagccaact
gtgtgcagacatctgtttcctaactaccaggttgatgtcttcatctacattctagaacat
gatggagcatgtttatcagcagccatcaacgcagcaggcttagctctagcagatgccgca
gtacccatgtatgatattattacagcatgttccgtagccattgttggcgacaggctcttt
gtagaccccaccgaggccgaagaacacgtagcaacaatcagcccagagacaaattctaat
catggagttataacaatgtcaatgttgtcagagttaaaacagatatcagactttgcacta
gtagggtctttggatacagaatgtgtgaacacagcaatggatattttagagaaagaatgt
gaatcacttgtaccgcagatgcaaaaagttcttgttacgaatattgtgaagagttttgaa
caaaggcagaggttagaagaggaggcaaatgagagggaacaggctttaaacatcaagatg
gaggaatggagaaaattattaaatgctggatga
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