Trichoplusia ni (cabbage looper): 113494703
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Entry
113494703 CDS
T05757
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
tnl
Trichoplusia ni (cabbage looper)
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tnl03009
]
113494703
Ribosome biogenesis [BR:
tnl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
113494703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_GNC1
Motif
Other DBs
NCBI-GeneID:
113494703
NCBI-ProteinID:
XP_026728929
UniProt:
A0A7E5VKX4
LinkDB
All DBs
Position
6:7571040..7582996
Genome browser
AA seq
2763 aa
AA seq
DB search
MKSKPVKHKTTNTFRFIPFAERINAIDIRHAALYNIEHAYAQQPQENETHFFVALQKWHV
LNLTENFKKFRKEVFGIITLPQLVHKKEEVLDILEKYLKLEDQLCLQPLLEILVSVAKDL
REDFYPHFPKFLDILIKLLSTKDAERLEWTLVCLAFLFKVLKPYLKKDIAGVLKRIIPLL
SETQPQYINNFAAESFAFVARDIRDKKKFVGLILNYLQSNDDAITGCGHLLFEILRGVSG
KFHSCIETFLPILLQHLKDHKEHQEIMFKVLTQTIEDSLQTISYKEYGVFWTSIIKFTEE
ILKEDDQESKGLEYILRLAGQVIEHQQGKYLINPPQFVLLLIKVICEQSSETVLEVCSQI
GAVLLLSPNVSLSQEHAGIIVKVLLPLPFPNILINFVQNVVDYSQFDMHILPPFINFVIQ
SNFDKEAMGTLSKICLKKSPLSMNGIKLFEWVKYPIDFGKHLLSFVDHLNRVMAEDLEKH
IENPIQLTNLLFCLPHVERNDIDSCIKLLGGLISKLLNILASYNLENQSNENKFHCDTTA
LSRCARKVLFILAVAMESAIHLSSCKKLKEICDIDTLLPVIVPCASDPNYLCALHVLDLY
LTAYEHENGLTYPYLSLVHSYLKSNVSSPFHVVRLITTHIYKLFENVEELNKTVEVGGTV
EKFSVFSRCYAVESISPSIQEYRSQLNMLQKMTFNTTQYALAKETDFHLFALNYMLGVLY
VNFKLLWEPVTEFIAGYGNALNVDDFWPTFHTALESSFTNAKKNLKQFHFDEEIETNFED
LRSLYSEYNSISERPDLYNYRNLILKVMLNCIQVCEARNRDVVVLFLNFIEEEYRRNDSM
NALKIDMEIRDKMEVEEEKPEENSESIEEIIEEIDAKETVSGKIVFKTLINIMQVLSQFK
NPRALHKEPVFWELYMEFLKHKNPGLQKYALDCVINYKNKSVTPYKNNLCNLVDDKKFKD
ELTLFKITEDAKSIQPEDREHVVPLILRILYGKMTSKLVADKKGGGQNRRSLVMRYLAGC
NENELKMFIEMAFSHYKPYLSMKPREIYDSISSNLDLKSVTSPGKLHSILNLFEVVREYF
SGYMKEELLSQFLSIYYAICSTVAAVLLQGDKVHVGYVKIMKNLRTLALGTTRKLFEQFT
KYPWNQDELYVMFETLIWPLIPKLHIEGIHSPTALLRLLNAWCQNPRYYILLVTTSEKDS
YSSLPAVFKLLLAPKTSPGVVNMILDMIEKLITLTEDEEDKEIPRIESFNTLPVEGPEHV
ANINYGSKILIPHIPSILEVMKRRMANSAKSNTVNKRDLLILSRITELVASPELCDELLT
LLLPILVKKVCMNMAEENMEHAVNTIINLLGHSTNPQVYIKNLAVLFNKVGPVDVRKLLI
KLLASIAESSPKNKEILARMANIVAEMNAFNKRWIEQPDFDRRIDAYKQIYQLLDKNEID
VDLAILIVNNCFYFIRTEKDIGLRDSAGLCLHRILPKLLMKYWSANDGQFLVRDTVLSLI
STGIRDSKNEILRNESINLLGELARECPNADVVISDLAHFVNKEDREVDFFDNMCHLQMH
RRVRAMLKFCKVAKKMTKCPTPRTLTNFILPMASMYICDDKYTDKNTLIDACIEVVTTCC
RLLPWYHYEVILKLYLYKMRHSTEHQKQLTRILVGIIDAFHFDFSKVKNIEIPKALITNV
HKFQQINKDTENKENVDNSNINAEDDTENESEVKDLNVDEESELKAADDEEAGEEPSKEV
PNIPAFERITQVSPSVAKRIIKSLTAGLLPQLNRAIGKMTEHEESHKVNRRKTGFDRQEE
DMIRVPIALALVKLLQRLPGDLLKHQLPGIIIKLCSFLKSPLKQVRITARDIVKKIMLTV
GTAYLGVLLEHLTLLLTRGFQVHVLVATIHTVLDALKSDFKPGELNDNLHYILDVCANDL
FGALSEEKEVDKLHYKTPEAKPSKKSYVTLMIVSQNITEQCLINLILPFKEVLQKHHSKK
IVLKVQEAFMHITSGLVTNKFIDIESLFIFLHGVASESIPEFVLGAPKRQITEVQREKML
RAKPDCFLIPETPKRNKESQARHVKTSGKANSHVLVEFSLNILYVILKREKVPRMDCRAF
VDPLVPLLVDALKSDHVKVTTVAMKCIATLWTIRVSTPTLEEMVQDIVKTIFLTLHKYAT
FEISKQNDNYHLVRTAFKAVTVLIRNVKYYKLEADQLKTLLLYAEEDCQNDDKQANSFSL
LKAILEARLVSAELHEVMEKVSKICILSESAKSRDEARLIFANYLTHYSPGKRLEKYIDF
FVSQLNYELQHGRESCLKFLEMIINKLAVAQLSKQAGHLLVSLGAAMQADSAPDCRAAAA
ACIEAMLLKFPQAERNKLFDLVLTFFKDNQPVHFELAAQLTTRFVNVEQDNFKNRLDTIL
SLVSGKILLLSNDITEGRFVKIKLDQSDEKTDEDKQKEKDHSLIQILNLIERITVHCAPS
LKNKKFEQEYDEIAMQCKALLAYPHSWVRLKSAKILGQLLTVVDVEELEAIVQKSVESER
GFIYEDTEEVLRSLVLDLCAQYTTSAAKEIVEQVTEVLFLILKLVHSMPSFKLGKKIQME
GEDAEGGSKLNIRWILYKLRRAINGEVARAPTSMTIRTSIFTMWTHVISSLEGDDVNKIV
DVILPPIVRELSTGDAATPATPAKQLATRLGKKLRRKIGDIHYSKLVADAQTKLNIKRAE
RKKLLLQEKVHNPEKAAKRKLQLKEKKKQAKKVKMEMVTGKRPRPKKRKAEDIDFEDQLL
NDD
NT seq
8292 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtaaaccagtcaagcacaagacaacaaatacctttcggtttataccatttgct
gaacgtatcaatgctattgatattcgtcatgcagccctatataatatcgagcatgcatat
gcgcaacaacctcaagaaaatgaaacacatttctttgtggcactacagaaatggcatgtg
cttaacttgactgaaaactttaaaaagtttagaaaagaagtgtttgggatcataactttg
ccacagcttgttcataaaaaagaagaagttttagatatactagaaaaatatttgaaatta
gaagaccagctgtgtctacagccattacttgaaattctggtttcagttgccaaggattta
agagaagatttttacccacactttccaaagtttttagacatacttataaagttgctaagc
acaaaggatgctgaaagactagaatggacattagtctgtttagcatttctattcaaagtt
ctcaagccatacttgaagaaagatatagcgggtgttttaaaaaggataatacctttacta
agtgaaacacagccacagtatataaacaactttgctgcagaaagctttgcatttgttgcc
agagacataagagataaaaaaaagtttgttgggcttattctcaactatctacagagtaat
gatgatgctattacaggttgcggtcatttactatttgaaatactccgtggtgtcagtggc
aaattccacagctgcatagagacattcctacctatcctacttcagcacctcaaagaccac
aaagagcatcaagaaataatgttcaaagtattgacacaaactatagaggacagcttacaa
accatttcctataaagaatatggagtcttctggacaagcataatcaagttcaccgaggaa
atattgaaagaggatgatcaagagagcaaaggtttggagtacattctgaggcttgctggt
caagttatagagcaccaacaaggaaaatatttaataaaccctccacagtttgtactgctc
ctaataaaagttatttgtgaacagtcatcagagactgttctagaagtctgctcccagatt
ggggctgtcctactcctgtcaccaaacgtctctctgtcccaggaacacgctggaatcatt
gtcaaagtgctcctacccctaccatttccaaatatactaatcaactttgtccagaatgtt
gttgactattcacaattcgacatgcacatattaccacctttcatcaatttcgttatacaa
tcgaattttgataaagaagcgatgggaacactatctaagatttgtcttaagaaatcacct
ttatctatgaatggtataaagttgtttgaatgggtgaaatatcctatagattttggtaaa
caccttctgagtttcgtggaccacttgaatagagtgatggccgaagatttagagaaacat
atagaaaatcctattcaactcactaaccttctgttttgtttgcctcatgttgagagaaat
gacattgactcctgtataaagttgttgggtggtcttatatctaagttgttgaatattttg
gcgagttacaatctggagaatcagtccaatgagaataaattccactgtgacacgacggcg
ttgtcacggtgtgctagaaaagttctgttcatattggctgtggccatggaaagcgctatt
cacttgtcgagctgtaagaaactcaaggagatatgtgatatagacacactgctgccggtg
atcgttccttgtgcctccgacccgaactacctctgtgcgttacatgtcctcgatttgtat
ttaacagcttatgaacatgagaatggactcacttatccttacttatcactggttcattcg
tacttgaagagtaatgtgtcttcgccttttcatgtggtccggttgataacaacacacatt
tacaagttatttgagaatgtagaagagttaaataaaactgtggaagtaggaggcactgtg
gagaaattctcagtttttagtagatgttacgcggtagagtcaatatcgccgtccatccag
gaatatagatctcagttgaacatgttacagaaaatgaccttcaatacaacacagtatgcc
ttagctaaagaaactgacttccacctctttgcgttaaactacatgttaggagtgttatat
gtcaatttcaagttgctctgggaacctgtaacagagttcatagctggctacggaaacgcc
ctaaatgttgacgacttctggccaacatttcatacagccctcgaatcctcattcacgaac
gcaaagaaaaatctaaaacagttccattttgatgaggaaatcgaaacgaatttcgaagat
ctaagaagtctgtactcagagtataacagtatatctgaaagaccagatttatacaactat
aggaatttgattttaaaagtcatgttgaattgcattcaagtttgcgaagctaggaataga
gatgtggtcgttttattcttgaatttcattgaggaagaatacagaagaaatgacagtatg
aatgcgttgaaaattgatatggaaatacgtgataaaatggaagttgaagaggagaagccc
gaagaaaattctgagagtattgaggaaattattgaagagatagacgcgaaggaaacagta
tctggcaaaatagttttcaaaactctcatcaatattatgcaagtcttatctcagttcaag
aatccaagagctttacataaagaacccgtcttttgggaactgtatatggagtttttgaaa
cacaaaaaccccggcttgcagaagtacgctctagattgcgtgataaactataagaacaaa
agcgtaacgccttacaagaacaatttatgtaacttagtagatgacaaaaagttcaaggat
gaattgactttgtttaaaataactgaagatgcaaagagcatacaaccggaggatagagaa
catgtggttccgttgatactaagaatcctgtatgggaaaatgacctctaaactcgtagca
gacaagaaaggaggcggtcagaaccgaagatcgctagtcatgcgatatctagccggctgt
aacgagaacgaactgaaaatgttcattgaaatggcattctctcactacaaaccatacttg
tcaatgaaaccgcgtgaaatatatgatagtatttcatccaatttagatttgaaatctgtg
actagccctggcaagttgcacagcattcttaacttatttgaagtggtccgcgaatatttt
agtggttatatgaaagaggaacttctgtcacaatttttaagcatatattatgcaatttgt
tcgactgtcgcagctgtcttattacaaggggataaggttcacgttggttacgtgaagata
atgaaaaatcttcgaactcttgctttaggaacgacaaggaaactttttgaacagtttact
aaatacccttggaaccaagatgaattatacgtaatgtttgagactctcatttggcctttg
attcctaaattacatattgaaggtattcacagccctaccgctctccttaggttgttaaac
gcctggtgccagaacccacgctattatattttactagtgactacttcagaaaaagattcg
tacagttcactaccagcggtattcaaacttttgctcgccccaaagacaagtcctggagtt
gtcaatatgatattggacatgatagaaaaacttataacgctaactgaggatgaagaagat
aaagaaatacctcggattgaatcatttaacactttaccagtcgagggccccgagcacgta
gcaaatatcaattacggaagcaaaatcctcataccacacataccgagcattttagaagtt
atgaagagacgaatggctaattcagctaaatcgaacacagtgaacaaaagggatttatta
atactgtcaagaatcacagaactagtggcgtcgcctgaactatgtgacgagctattgacc
ttacttctaccgatcttagtcaagaaagtgtgcatgaatatggcagaagaaaatatggag
catgccgttaatactattatcaatttactaggacacagcacaaatccacaagtttatatc
aagaatttagctgtattgttcaataaagtaggtcccgtggatgtaaggaagttacttatt
aagttactggcctccatcgctgagagcagtcctaaaaacaaagaaattctagctagaatg
gccaacattgtcgcagaaatgaatgccttcaacaagagatggattgaacagcctgatttc
gatcgaagaatagacgcttacaagcaaatataccagttacttgataaaaatgaaatagac
gtggaccttgcaatactcattgttaacaattgcttttattttatacggactgaaaaggat
atcggtttgcgagacagtgcgggtctctgtttacaccggattctaccaaaactcctaatg
aagtactggtcagcaaatgatggtcaattcttagttagagacacagtattatcacttata
tccactggtataagggattcaaagaatgaaatattgagaaacgagtccataaacttactc
ggagagttggctcgagaatgtcccaatgctgatgttgtgatatcagatctagcacatttt
gttaataaagaggatagagaagttgatttctttgacaacatgtgccatcttcaaatgcac
agacgtgtgagagcaatgttaaagttctgcaaagtggcgaaaaagatgacgaaatgtccc
acaccaaggactctaacgaatttcatattaccaatggcatctatgtacatttgtgacgat
aaatatacagataaaaatactttaatcgatgcctgtatagaagttgttactacttgctgt
agactgctgccttggtaccactacgaagtcatactaaaattatacttgtataaaatgcga
cattcaacagaacatcagaaacaactaactcgtatcttagtgggaataatagatgcattc
catttcgatttctccaaagttaaaaacattgaaatacctaaagcattaattactaatgtg
cataaatttcaacaaatcaataaagatacggaaaataaagagaatgtagataatagtaac
ataaatgctgaagatgatacagaaaatgaatctgaagtaaaagatttgaatgtcgatgaa
gaaagtgaattaaaagctgcggatgacgaagaagcgggcgaagaaccgagcaaagaggtt
cctaatataccggcttttgaaaggattacacaagtatcgccatctgtggctaagagaatc
attaagtctttgacggctgggttgttgccgcaactgaatcgtgctataggcaaaatgact
gaacacgaggaatctcacaaggtgaatcgacgtaagactggcttcgatcgtcaagaggaa
gacatgataagagtgcccatagctctagcacttgttaaattactgcaaagactgcctgga
gaccttctcaaacatcagctgcctggtattatcattaagctgtgttcatttttaaagtca
ccgttaaaacaagtaaggattactgcccgagatatcgttaagaaaattatgctgactgtt
ggtactgcctacctaggagtcttacttgaacatcttactttgctgctaaccagaggcttc
caggtccatgtgttagtggccacaatacacacagttctcgacgctctcaagtctgacttt
aaaccaggggagttaaacgataatcttcattatattcttgacgtttgtgccaacgatctt
tttggagccctttctgaggaaaaagaagttgacaaactgcactacaagactccggaagcg
aagcccagtaagaaaagctacgtaacactcatgatagtgtcccaaaatataacggaacag
tgccttatcaatctaattctgcctttcaaagaagttttgcaaaagcaccactcgaagaaa
attgtattgaaagttcaggaagccttcatgcatattacaagcggactagttacaaacaag
tttattgacatagaatctctgtttatattcttacacggagtcgcttccgagagtataccg
gaattcgtattgggggctccaaagaggcaaataacagaagtccaacgggagaaaatgcta
agagcgaaaccagattgctttttgattcctgaaacgccgaagcgtaataaagaatctcag
gcgcggcacgtcaagacatctggtaaagcgaactcacacgttttggtagaattcagttta
aacatcttatacgtcatattaaaaagagaaaaagtaccaagaatggattgtcgtgcattt
gtcgatccactcgtgcctttgttggtcgatgctttaaagagcgatcacgtaaaagtcacg
accgtcgcaatgaagtgtatagcaacgctatggactataagggtcagcacgccaacgctt
gaggaaatggtgcaagatattgtaaagaccattttcctaacattacataagtacgcgact
tttgaaatcagtaaacagaatgataactatcatttagtcaggactgcttttaaggcagta
acagttctcattcgtaacgtaaaatactacaagttagaagcggaccagctgaagactctt
ctattatatgctgaagaggattgtcagaatgacgacaagcaagcgaactccttctctctg
ctgaaggcgatactcgaagctcggctcgtgtccgcagagttacatgaagttatggagaaa
gtctccaagatatgtatacttagtgagtctgctaagtctagagacgaagctcgcttgata
ttcgccaactatctgacgcactactcaccaggcaagagactagagaagtacattgacttc
tttgtgtcacaactcaactatgagttacaacacggacgggaatcctgcctgaaattcctc
gagatgatcatcaataaactagcagtagcgcagctgtcgaagcaggcgggccacctgctg
gtgtcgctgggcgcggccatgcaggccgacagcgcgccggactgccgcgcggccgccgcc
gcctgcatcgaggccatgctgctcaagttcccacaagctgagaggaataaactcttcgac
ctagtgctcaccttcttcaaagataatcagcctgtacattttgaactagccgctcagttg
accacacgcttcgtcaacgttgaacaagacaacttcaagaatcgactggacacaattcta
tctctagtcagcggcaaaattttattactgagcaatgacatcacggaaggcagattcgtc
aaaataaaactcgaccaatcggacgaaaagactgacgaagacaaacaaaaagagaaagac
cacagtttaatacaaatattgaatctaatcgaaaggatcacggtgcattgcgcgcccagt
ttgaaaaataagaagtttgagcaagagtatgatgagatagcgatgcaatgtaaagcattg
cttgcttatcctcactcgtgggtgcgtttgaaatctgctaagatattgggacagttgttg
actgtagtcgatgttgaggagttagaggctattgtgcagaagtctgtggagagtgaacga
ggatttatatatgaagatactgaggaggttctaaggagtttggttttagatctgtgtgca
cagtatactactagtgctgctaaggagatagttgaacaggtgacagaagtgttattctta
atactgaagttggttcattctatgccgagtttcaaactgggcaagaagatacaaatggag
ggagaagacgcagaaggtggcagcaaactgaatatccgatggattttgtataagttgagg
agagcgatcaacggggaagtagctagggcacccacttctatgaccattaggacatcaata
ttcacaatgtggacacacgtcatcagttccttagagggtgatgacgtcaataaaatagtt
gacgtgattctcccgccaatagtccgggagctgtctaccggggacgcggccacgccagcc
acgcccgccaagcagctggccaccaggctcgggaagaaactcaggaggaagatcggagat
atacattatagcaaactcgttgctgacgcacagaccaagctcaatattaagagggctgag
aggaaaaagttactgctgcaagaaaaggtccataacccagaaaaggctgcaaagaggaaa
ctgcagttaaaagaaaagaaaaagcaagctaagaaagtgaagatggagatggtaacgggg
aaaagaccgaggccgaagaaacggaaagctgaagacatcgactttgaagaccagttactg
aatgacgattga
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integrated database retrieval system
