Trichoplusia ni (cabbage looper): 113496349
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Entry
113496349 CDS
T05757
Name
(RefSeq) polyadenylate-binding protein 1-A
KO
K13126
polyadenylate-binding protein
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03015
mRNA surveillance pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113496349
09123 Folding, sorting and degradation
03018 RNA degradation
113496349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113496349
03041 Spliceosome [BR:
tnl03041
]
113496349
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113496349
mRNA cycle factors
Stress granule specific factors
113496349
Spliceosome [BR:
tnl03041
]
Complex C
Other components
Complex C specific factors
113496349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_DEAH11
RRM_occluded
Nup35_RRM_2
RRM_RdRP1_2
RRM_3
RRM_PARP14_3
POP1_C
Lysine_decarbox
Motif
Other DBs
NCBI-GeneID:
113496349
NCBI-ProteinID:
XP_026731331
UniProt:
A0A7E5VT50
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All DBs
Position
8:complement(14345176..14349078)
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AA seq
611 aa
AA seq
DB search
MNPGPPNYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDILKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFT
AFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER
EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGSSRGFGFVAFE
DPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYV
KNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV
GTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGAGGYFVPTIPPAQRFY
GPAQMTQIRPSPRWTAQPPVRPSTQTAASGYPNMQAPFRPAPRAPTQAALRTSLGARPIT
GQQGVATAASIRAPLVTQSGRPAGYKYTANMRNPPAPQPAVHIQGQEPLTATMLAAAPLQ
EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQA
HQAKQQATKKE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctggacctcccaattacccaatggcatctttgtatgtcggggatttacactct
gatatcactgaagccatgttgtttgaaaaattttcgaccgctggtccggttctttctatc
cgcgtttgtcgcgatatgataactcgtcgatccctgggctacgcttatgtaaattttcag
cagcccgctgatgctgaaagagctttggacactatgaattttgatattctaaaaggaaga
cctattagaatcatgtggtcccaacgagatccttctctacgcaaatccggcgtggggaat
gtttttattaaaaatcttgacaaaactattgacaacaaagctatgtatgacacttttact
gcatttggaaatattctaagctgcaaagttgctcaagacgaaactggtgcctccaaagga
tatggatttgttcattttgaaactgaagaagccgccaacaaatcaattgaaaaagtcaat
ggaatgctactcaacggaaaaaaggtttatgttggtaggtttattccacgcaaagaacgc
gaaaaggaacttggtgaaaaggccaagttgtttacaaatgtttatgtcaaaaactttggc
gaagatttcagtgatgaaatgttgaaagacatgtttgaaaagtatggccgcataacgagc
cacaaagttatgtataaggatgatggctcttctcgcggatttggttttgtagcttttgaa
gatcctgatgctgcagaacgagcatgtatggaattaaatggaaaagaacttgtagagggt
aaaccgttgtatgtaggacgtgctcaaaagaaagctgaacgtcaaaaagagctcaagcgt
aaattcgagcaactgaaatctgaaagattgactcgttatcaaggtgttaacttatatgtc
aaaaacttggatgacaccattgatgatgaacgtcttcgtaaggaatttgcacctttcgga
actataacatctgcaaaggtcatgttagaagatggtcgcagcaaaggatttggtttcgtt
tgcttctcatctcctgaagaagctacaaaagctgtgacagaaatgaacggccgcattgtt
ggaacaaaacctttgtatgtagcattggctcaacgtaaggaagaccgtaaagctcatttg
acttctcaatacatgcaaagaatggctagcatgcgaatgcagcaaatgggtcaaatattc
caaccaggaggtgctggtggctactttgtaccaaccattccgcctgctcaaagattctat
ggtcctgctcaaatgactcaaataagaccttcgcctcgatggactgcgcagccacctgta
aggcctagcactcaaactgctgcgtcaggatacccgaatatgcaggcgccattccgtccg
gcccctagagccccaacccaagctgcgctccgcacttcactgggtgctagacccattact
gggcagcaaggtgtggcaacagcagcctccattcgtgctccacttgttactcaaagcggc
cggcctgcaggatataaatatactgccaacatgcgcaacccaccggctccacagcctgca
gtgcacattcaaggtcaagagccattgacagcaactatgctggctgctgcacctcttcaa
gagcaaaagcaaatgctcggcgaacgtttgttcccgttaattcaaagaatgcatcctgat
ttagctggtaaaattacaggaatgcttttggaaattgacaattctgaacttctccatatg
ttagaacatggagagtcacttaaagctaaagttgacgaagctgttgctgtattacaggcc
caccaagctaagcagcaagctactaagaaagagtag
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