Trichoplusia ni (cabbage looper): 113496403
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Entry
113496403 CDS
T05757
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
tnl
Trichoplusia ni (cabbage looper)
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnl03021
]
113496403
03036 Chromosome and associated proteins [BR:
tnl03036
]
113496403
Transcription machinery [BR:
tnl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
113496403
Chromosome and associated proteins [BR:
tnl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
113496403
SLIK complex
113496403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
113496403
NCBI-ProteinID:
XP_026731393
UniProt:
A0A7E5VSS0
LinkDB
All DBs
Position
8:15214246..15225805
Genome browser
AA seq
1808 aa
AA seq
DB search
MHLKGFMNESGSDSNSEKGEKSDSSGSGSGSESESGSSSSGSGSERSGSDKSGDRSHHSD
DTKSSPKHSNANSSKSDHHTDKNSSDEDSPSKSKSRNNHAKLKSDLWEDNPDIYGIRRSA
RSRKEPDRLKLADSDSSERGRTHSRKSRKRSDSWNSDSSDSDSDLKGSPPPPSKRPGQRS
VPLRKRKPTRRRFTSDEDESSEGSDDDHKSRTATRRTGAAVSYKEASDEQTDSSDLLEVE
GVDGEAEAEPEPEDHSETIERILGHRRGKKGVTGNVTTLYYIEEHGDPNEGCDPDDIENT
EPQYLIKWKGWSHIHNTWESERTINEQKVKGLKKLENYIKKEADLSWWRQQAGPEDIDYY
ECQNELQQELVKTYNNVERIIAEQTRELEGGGTAHEYFCKWESLPYADATWEDALLIEKR
WPEEVEQFKYREAAKTTPSRHCPVLRRRPKFHHVKEQPDYMGKDASYVLRDYQMDGLNWL
IHSWCKDNSVILADEMGLGKTIQTICFLYYLFQSQQLYGPFLCVVPLSTMTAWQREFQQW
APDINVVTYIGDLSSRDIIRQFEWSFASSKRLKFNAILTTYEILLKDRQFLRSFSWACLL
VDEAHRLKNDDSLLYKALKEFDTNHRLLVTGTPLQNSLKELWALLHFIMPYKFESWEEFE
KDHEDAATKGYEKLHKQLEPFILRRQKKDVEKSLPAKVEQILRVEMTSIQKQYYKWILTK
NYSALRKGVKGSINTFINIVIELKKCCNHALLTKPEDFESRASLATTDAVEKLLRGSGKL
LLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQRRHFPFQRLDGSIKGEIRKQALDHF
NAEGSTDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIY
RLVTARSVEEDIVERAKRKMVLDHLVIQRMDTTGRTVLNKRDASGTSANNPFNKEDLNAI
LKFGAEELFKDDDENDEDPVCDIDEILQRAETRDEVPSMAGDELLSAFKVASFAFDEDKA
VMEVKKENAEEESKDWDDIIPDHVRKTIAEQEKNKEMEDLYLPPRRKNLQANNADGTEGR
KRRGRGSGEGGDGADLDGDGESDISDASADDDRPRKRGRPPASHREKIKGFTDQEIRRFV
KSFKKFSAPLKHLDSIACDAELQEKPLADLKKLGEILQERCKAVLNDTSEAPNEQLDGRK
NTRKTFKLGGVPVNAKTMAACQDELAPLDDFLPDTKEERLKWQLDFRTRPANFDVEWGVP
DDSKLLAGIYQYGMGSWEAIKMDSSFEIGDKILTNEDKKPQAKHLQSRAEYLLKLIKKLL
DTKNGKQKQRKPRTKRGNKEPVTKDIVEDDASSGDENKKSNKTGKNDKSDKSKSKLEELS
THDETSNDKKEKDKKRGKRDSNRKNDKSKSRNKKPAGPMHFTANNEPRALEVLGDLDPSV
FEECKEKMRPVKKALRALDNPDQTLSEADQVARTRACLTQIGNQIDICVDAYPDPEKKVE
WRSNLWYFVSKFTNFDAKQLYRLYKYGLKKTESSSKREGKHKENVKSNNKNNHNSNHVKS
YKKDGKADNANDKKEKRPKTDRDKFDKNNDKIPHTSGIKRKLEEGECDPDPSENKRHERH
KNKHKDRKDRDRSLKRDDLMYRERSRSERERDRDRDRERDRDRERDRERDRDRDRERSRT
RRDSGGLGAARSRPPYSMPHAHADHAAPHAHPAWTPPSYPGPRQYRADRTPRPHDKRSRY
SGFSGSMQGNPYGGYYDSTTMAAGMGFPPVRPYPDEWRSYTQPDYAYDDRDYEREVYRRD
YDRRAPPT
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgcacttgaagggattcatgaatgaatctggaagtgattctaatagcgagaaaggtgag
aagagtgattccagtggttcaggctcaggcagcgaaagtgaaagcggatctagttcatct
ggttctggatctgagaggtcaggatctgacaaatcgggggacaggtcacatcacagtgat
gataccaaatcatcaccaaagcacagtaacgcgaactcttccaaatctgaccaccacact
gacaaaaattcttcagatgaggattctccttctaaatctaaatcacgcaataatcatgcc
aaattgaaatctgacctatgggaggataatccagacatatatggaatcagaagatcagct
agatctcgaaaagagccagatagacttaaattagcagatagtgattctagtgaaagaggc
aggactcacagtagaaaaagtaggaaaagaagtgattcatggaattcagactcttcagat
agtgatagtgacttaaaaggttcaccacctccaccttcaaaacgaccaggccaaagaagt
gtacctcttcgaaaaagaaaacctactcgtagaagatttactagtgatgaggatgaaagt
tctgaaggcagtgatgatgaccacaaaagcagaacagcaacacgacgtacgggcgcagca
gttagttacaaagaagcaagtgatgaacaaactgactcttccgatcttttggaggtggaa
ggtgtggatggtgaagctgaagcagaaccagaacctgaagaccatagtgagactatagaa
agaatcttagggcacaggagagggaagaaaggagtcactggaaatgtgactacactttac
tatatagaggagcatggagatcctaatgaaggctgtgatccagatgatattgaaaacact
gaacctcaatatttgatcaaatggaaaggctggtcacatattcacaatacttgggagtca
gaaaggacaattaatgaacaaaaagttaaaggtctcaaaaaattagaaaattatataaag
aaagaagctgatttgtcatggtggagacaacaggcaggtcctgaggatatagattactat
gaatgccaaaatgagttgcagcaggaattagtcaagacctacaataatgtagaaaggatc
atagcggaacaaacacgtgaattagagggtggtggcacagctcatgagtatttctgcaag
tgggaatctttaccatatgctgatgctacttgggaagatgcattactaatagaaaaaaga
tggcctgaagaagtggaacaatttaaatacagagaagctgctaaaacgacaccctcaaga
cattgtcccgtcttgcgaagaagacctaagtttcaccatgtcaaggaacagccagattac
atgggcaaagatgcgagttacgttttaagagattatcaaatggatgggttgaattggtta
atacattcctggtgtaaagacaactctgttattcttgccgatgaaatgggtttaggtaaa
actatacagacaatttgtttcctgtactacctctttcaatctcaacaactatatggacca
ttcctatgtgtggtgcctttaagtacaatgacagcatggcaaagggagtttcagcagtgg
gcacctgatattaatgttgttacttatattggtgatctcagtagtagggatattatcaga
cagtttgaatggagttttgccagttcgaaaagactgaagttcaatgccattttaactaca
tatgaaattttactcaaagatagacaattcttaaggtcctttagttgggcttgcttatta
gttgatgaagcgcacagattaaaaaatgatgattctttgttgtataaagcacttaaagaa
tttgatacgaatcacagattattagttactggtactccattacaaaactcactcaaagaa
ttatgggccttattacattttattatgccttacaagtttgaatcatgggaggagtttgag
aaagaccacgaagatgctgcgaccaagggttatgaaaaactacataagcaattagaacct
tttatattaaggaggcaaaagaaagacgtagagaaatcattgccagctaaagtagaacaa
atattacgagtagaaatgacatcaattcaaaagcaatattataagtggatcttaactaaa
aactatagtgctttacgaaagggtgttaaagggtctataaatacgtttattaatatagtt
attgaacttaagaaatgttgcaatcacgccttattgactaagcctgaagattttgagtcc
agagcgtcgttagctacaacggacgctgtagagaaactgctgaggggctctggaaaatta
ctcctgttagataaactattatgtaggttaaaagagacaggtcatagagtgctaatattt
tctcaaatggtcagaatgttagacattttggcagaatatttacaaaggaggcattttccc
tttcaacgtcttgatggcagtataaagggtgaaataagaaagcaagccttagatcacttt
aatgcagagggatctaccgatttctgttttctactatccacccgagctggtggtttaggt
ataaacttagctactgcagatactgtgattatatttgactctgattggaaccctcaaaac
gatttgcaagctcaagcgcgagctcatcgtatcggacaaaagaaccaggtcaacatttat
agattagttaccgctcggtcagtagaagaagatattgttgagagagctaaaaggaaaatg
gtgcttgatcatcttgttatccagcgtatggacaccactggtagaactgttcttaataaa
cgcgatgcttcagggacaagcgccaataacccatttaataaggaagatttaaatgcaata
ttaaaatttggtgctgaagaattgtttaaggatgatgatgagaatgatgaggaccccgtc
tgtgatattgatgaaatcctgcaaagagctgaaactcgcgatgaagtcccctccatggcg
ggagatgaacttctgtcagctttcaaagttgctagctttgcctttgatgaagacaaagca
gtaatggaggttaaaaaagagaatgcggaagaagaaagcaaagattgggatgacattata
cctgaccatgtgaggaaaactatcgctgagcaggagaaaaacaaagaaatggaagactta
tacttgccacctaggagaaagaatctacaagctaataatgctgatggtactgaaggtcgt
aagcgtcggggtcgtgggtctggcgagggcggcgatggcgcggacttggacggcgacggc
gagagcgacatctccgacgcgagtgcggacgacgaccgcccgcgaaagcgaggccgcccg
cctgcctcgcatagggagaaaatcaagggattcactgatcaagagatacgaaggttcgta
aagagcttcaagaaattctcagcgcccttaaaacatctagatagtatcgcctgtgatgca
gaattacaagaaaaaccactcgcagatctcaaaaagttaggtgaaattctacaagagcga
tgtaaagcagtgttaaacgacacttcagaagcaccaaatgaacagttagacggtcgcaaa
aacactagaaaaacttttaaacttggtggagtacctgtaaatgcaaaaacgatggctgca
tgtcaagacgaattagcacccctcgatgacttcctgcctgacaccaaagaagaaaggtta
aagtggcagctggactttagaacaagaccagcaaacttcgatgtggagtggggtgtacca
gatgattccaaattactagcaggaatatatcaatatggtatgggttcatgggaggcaatc
aaaatggattcctcttttgaaattggagacaaaattctcacaaacgaagataaaaaacct
caggcgaagcatttgcagtctcgtgccgagtatttgctgaaattaataaaaaaattactt
gatacaaagaatggcaagcaaaagcagagaaaacctcggacgaaacggggtaataaggag
cctgttactaaggacatagtggaagatgacgctagttctggtgacgagaataaaaaatca
aacaagactggtaaaaatgataaatctgataagagtaaatctaaactagaagagttgtct
acacatgacgagacctcaaatgataagaaagaaaaagataaaaaacgcgggaagagggac
agtaacagaaaaaatgataaatccaaatctcgaaataagaagcccgccggtcctatgcat
ttcactgccaacaatgaaccaagggcgttagaggttcttggtgatcttgatccatcagtt
tttgaagagtgcaaggagaaaatgaggccagtcaaaaaagccttacgagctcttgataat
ccagatcagacactctctgaagcggaccaagttgctaggacgcgggcttgtctcacacag
ataggcaaccaaatagacatatgtgtagatgcataccccgatcctgagaagaaagttgag
tggagaagtaatctctggtattttgtttcaaagtttacaaattttgacgcaaaacagctt
tataggttatataaatatggactgaagaaaactgaatcatctagtaaaagagaaggaaaa
cataaagaaaacgttaagtctaacaataaaaataatcacaatagcaatcatgtaaagtcg
tataagaaagatggtaaagcagacaatgctaatgataagaaagaaaagagacctaaaacg
gatcgagacaaattcgataaaaacaatgacaaaattccacacacgtctggaataaagaga
aagttagaagaaggagaatgtgacccagaccccagtgagaataagcgtcacgaaagacat
aaaaacaaacacaaggatcgcaaggatagggataggagcctgaagcgggacgatttgatg
tacagagagcggagtcggtcggagcgggagcgagatcgggaccgcgaccgggagcgggac
cgagaccgggagcgggatcgcgagcgagaccgcgaccgagaccgcgagcgctcgcggacg
cggcgcgacagcggcgggctcggcgccgcgcgctcgcgcccgccctacagcatgccgcac
gcgcacgccgaccacgccgcgccgcacgcgcaccccgcctggacgccgccctcctacccc
ggccccaggcagtaccgcgcggaccgcacgccgcgcccgcacgacaagcgcagcaggtac
agcggcttcagtggaagcatgcaaggcaacccctatggtggttactacgacagtacgacc
atggcggccggcatgggctttccgcctgtgaggccttacccggatgagtggcgaagctat
acgcagcctgattacgcatacgatgaccgggactatgagcgcgaagtgtacaggagagat
tacgatcgtcgcgcacctcccacctag
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integrated database retrieval system
