Trichoplusia ni (cabbage looper): 113496483
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Entry
113496483 CDS
T05757
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase Rpd3-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03082
ATP-dependent chromatin remodeling
tnl03083
Polycomb repressive complex
tnl04213
Longevity regulating pathway - multiple species
tnl04330
Notch signaling pathway
tnl04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113496483
03083 Polycomb repressive complex
113496483
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
113496483
04350 TGF-beta signaling pathway
113496483
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
113496483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tnl03036
]
113496483
Enzymes [BR:
tnl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113496483
Chromosome and associated proteins [BR:
tnl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
113496483
HDAC complexes
Sin3A-HDAC complex
113496483
BRAF-HDAC complex
113496483
REST complex
113496483
SHIP complex
113496483
MiDAC complex
113496483
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
113496483
Heterochromatin formation proteins
Other heterochromatin formation proteins
113496483
Chromatin remodeling factors
NuRD complex
113496483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
113496483
NCBI-ProteinID:
XP_026731524
UniProt:
A0A7E5VT94
LinkDB
All DBs
Position
1:14118577..14123575
Genome browser
AA seq
485 aa
AA seq
DB search
MAMQPHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAT
ADEMTKFHSDDYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEXCQLSAGGSVAA
AVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDSYESI
FVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGRCVELVKRFGLPFLLVGG
GGYTIRNVSRCWTYETSVALGVEIANELPYNDYFEYFGPDFKLHXFTSNMSNQNTQEYLE
KIKNRLFENLRMLPHAPGVQVQAIPEDAVNDESEDEDKVDKDERLPQSDKDKRITGDGEL
SDSEDEGEGGRRDNRSYRTPQPRKRPRLDKDGSQIKDEIKSEDTKDDVKNLSSVEEPKKE
IPPNP
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgcaaccgcatagtaagaaaagagtgtgctactactatgacagtgacatcggg
aactattattacggtcagggacatcctatgaaaccgcaccgtatacgcatgactcataat
ttactattaaattatggattgtaccggaaaatggagatatatagaccccataaagcaacc
gctgatgagatgacaaaattccattctgatgattatattcgcttcttacgatcaatcagg
ccagataatatgtccgagtataacaaacagatgcaaagattcaatgtcggtgaagattgt
ccagtgtttgatggtctctatgagntttgtcagctgtctgcaggtggatcagtggctgca
gctgtgaaattaaataaacaggcttctgagatttgtatcaattggggaggaggacttcac
catgccaaaaaatcagaagcctcaggcttctgttacgttaatgacatagtacttggaatc
ttagagttgctgaagtaccaccagagggtgttgtacattgatattgatgtccaccatggt
gatggggttgaggaagccttctacaccactgatagagttatgacagtgtctttccataaa
tatggagagtacttccctggaactggcgacttacgtgatattggtgctggaaaaggcaag
tactacgcagtaaacatacccctgcgcgatggaatggacgacgactcttatgaatccatc
ttcgtgcctatcatatcaaaagtcatggagactttccagcccagtgcggttgtcctgcag
tgtggagctgattcactgacaggtgacaggttaggttgtttcaatcttactgttcgaggt
catggccgatgtgttgagttagtgaagaggtttggcctacccttcttgctagttggaggc
ggaggttacacaattcgtaatgtgtcacgttgttggacctatgaaacatcagtggccctt
ggggtcgaaatagctaatgagttgccttacaatgattactttgaatacttcgggcctgac
ttcaagctacatnatttcaccagcaatatgtctaatcaaaatacacaggagtatttagaa
aaaattaaaaataggctctttgagaatctgagaatgttaccacatgcacctggtgttcag
gtacaagctattcctgaagatgctgtaaatgatgaatctgaagatgaagacaaagttgac
aaagatgaaagactgccacaaagtgataaagacaagcgcatcacgggagacggcgagtta
tcggactcagaagatgagggagagggaggccgccgcgacaaccgctcctaccggacgccg
cagccgcgcaagcgaccgcgcctcgataaggacggctcgcagatcaaggatgaaatcaaa
tctgaagacacaaaagacgacgtcaaaaacttaagcagtgttgaagagccaaagaaagaa
atacctccgaatccctga
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